View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20131_high_1 (Length: 643)
Name: NF20131_high_1
Description: NF20131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20131_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 17 - 626
Target Start/End: Original strand, 44379484 - 44380095
Alignment:
| Q |
17 |
cagagacccaattacaaaaatacttgacaagtgaaacagtttttcctgattatttgtaaaatcaaatggaagaacttagatggaaaattccaagaataca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44379484 |
cagagacccaattacaaaaatacttgacaagtgaaacagtttttcctgattatttgtaaaatcaaatggaagaacttagatggaaaattccaagaataca |
44379583 |
T |
|
| Q |
117 |
tcaacaaaagggtgaaaa-aataaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcacatattttaaaggctatgattcaa |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44379584 |
tcaacaaaagggtgaaaaaaataaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcacatattttaaaggctatgattcaa |
44379683 |
T |
|
| Q |
216 |
gctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattacactcactcttgcagtgtcatcag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44379684 |
gctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattacactcactcttgcagtgtcatcag |
44379783 |
T |
|
| Q |
316 |
cattgataagaacaaactcattcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaactaacattcagaaacacaatcacatgaatct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44379784 |
cattgataagaacaaactcattcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaactaacattcagaaacacaatcacatgaatct |
44379883 |
T |
|
| Q |
416 |
tcaaaaccctcttcaaaaacaactcttatctgtctctgtcatctcctataaaacacagaacac-actttgcattaannnnnnnnnnnnnnnngctcagaa |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
44379884 |
tcaaaaccctcttcaaaaacaactcttatctgtctctgtcatctcctataaaacacagaacacaactttgcattaaacacacacacacacacgctcagaa |
44379983 |
T |
|
| Q |
515 |
acacatcacaggaaaaaaccacctcacataactatacatagtactcaaacaatgtcagagacagaagaaaatattgaaacattaaaggagggaagtgttg |
614 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44379984 |
acacatcacaggaaaaaaccacctcacgtaactatacatagtactcaaacaatgtcagagacagaagaaaatattgaaacattaaaggagggaagtgttg |
44380083 |
T |
|
| Q |
615 |
gagcgtataaat |
626 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44380084 |
gagcgtataaat |
44380095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 28846887 - 28846937
Alignment:
| Q |
335 |
attcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaac |
385 |
Q |
| |
|
|||| |||||||||| ||||||| || ||| |||||||||||||||||||| |
|
|
| T |
28846887 |
attcatgttatgtgaccctgcaattagtctcccattagtgtccattgaaac |
28846937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University