View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20131_high_4 (Length: 324)
Name: NF20131_high_4
Description: NF20131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20131_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 231 - 323
Target Start/End: Original strand, 48954558 - 48954650
Alignment:
| Q |
231 |
tccaatatatatgttaaataaaccaagatttaatctccatactaaaagtaaaaccacaataattactaaattagttcttcgttgtcttcaatc |
323 |
Q |
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| T |
48954558 |
tccaatatatatgttaaataaaccaagatttaatctccatactaaaattaaaaccacaataattactaaattagttcttcgttgtcttcaatc |
48954650 |
T |
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Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 48954472 - 48954553
Alignment:
| Q |
84 |
ctggtttattacaaagccacgtacgtcagtatcgttttgaagggaaaaaaccttcctttacatagctcggtcctctatatat |
165 |
Q |
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| T |
48954472 |
ctggtttgttacaaagccacgtacgtcagtatcgttttgaagggaaaaaaccttcctttacatagctccgtcctctatatat |
48954553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 1116587 - 1116495
Alignment:
| Q |
225 |
tcaaaatccaatatatatgttaaataaaccaagatttaatctccatactaaaagtaaaaccacaataattactaaattagttcttcgttgtcttcaatc |
323 |
Q |
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| T |
1116587 |
tcaaaatccaatgtatatgttaaatacaccaaaatttattctccatact-aaagt-----cacaataatcactaaattagttcttcgttaacttcaatc |
1116495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 1116764 - 1116678
Alignment:
| Q |
118 |
ttttgaagggaaaaaaccttcctttacatagctcggtcctcta--tatattattccccctacctgaaaataaaagtataaatcataca |
203 |
Q |
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| T |
1116764 |
ttttgaagggaaaaagctatcctttacatagatcaatcctctacatatattattactc-tacctgaaaataaaagtattaatcataca |
1116678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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