View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20131_low_2 (Length: 497)
Name: NF20131_low_2
Description: NF20131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20131_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 482
Target Start/End: Original strand, 27667458 - 27667926
Alignment:
| Q |
13 |
tcatcatggatttaactcttgctaagtgcaagacgcttcagaaaataaaacacaagtggaatttttgctgttcaatagctattttgtgcagagatgccaa |
112 |
Q |
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| T |
27667458 |
tcatcatggatttgactcctgctaagtgcaagacgcttcagaaaataaaacacaagtg-aatttttgctgttcaatagctattttgtgcagagacgccaa |
27667556 |
T |
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| Q |
113 |
aattggaaaaaagtactggtgttgcacatacaacataaacacctgtatgattcagttaaatacaaatcaagggagtcttctgaacnnnnnnnnactagca |
212 |
Q |
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| T |
27667557 |
aattggaaaaa-gtactggtgttgcacatacaacataaacacctgtatgatacagttaaatacaaatcaagggagtcttctgaacttttttctaccagca |
27667655 |
T |
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| Q |
213 |
ggtatgtttgggatactacactggtaagatttacctt-ggctagatactgttgtcatataaaatacagtgccttgatttttcaaaattaaaatgactgtc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27667656 |
ggtatgtttgggatactacactggtaagatttaccttcggctagatactgttgtcatataaaatacagtgccttgatttttcaaaattaaaatgactgtc |
27667755 |
T |
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| Q |
312 |
ataatatagcccaatacttaatatgacccttccatgacatgtttatataggaaatgatatatttggccacatatgtagagggttcgttgagaattgagat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27667756 |
ataatatagcccaatacttaatatgacccttccatgacatgtttatataggaaatgatatatttggccacatatgtagagggttcgttgagaattgagat |
27667855 |
T |
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| Q |
412 |
gctcatagccaggtcttccttgcaatttttcttccttaagattggaaattaataataatctcagttgatat |
482 |
Q |
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| T |
27667856 |
gctcatagccaggtcttccttgcaatttttcttccttaagattgaaaattaataataatctcagttgatat |
27667926 |
T |
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Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 404 - 482
Target Start/End: Original strand, 27672931 - 27673010
Alignment:
| Q |
404 |
attgagatgctcatagccaggtcttccttgcaatttttcttccttaagattg-gaaattaataataatctcagttgatat |
482 |
Q |
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|||||||||||||||||| ||||||||| | ||||| |||||||| |||||| |||| ||||||||||||||||||||| |
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| T |
27672931 |
attgagatgctcatagcctggtcttcctcgtaatttgtcttccttgagattgaaaaatcaataataatctcagttgatat |
27673010 |
T |
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