View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20132_high_5 (Length: 290)
Name: NF20132_high_5
Description: NF20132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20132_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 36136450 - 36136189
Alignment:
| Q |
16 |
agaagcaacaagaataggtcggtccactttctcattttgagacagaagtattgtaatgttgagttggagattcactgtatataggagaagatttgctgat |
115 |
Q |
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| T |
36136450 |
agaaacaacaagaataggtcggtccactttctc--tttgagacagaagtattgtaatgttgagttggagattcactgtatataggagaagatttgctgat |
36136353 |
T |
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| Q |
116 |
acagaagtattgcaatgttgagttaggcatctaaaatttgcaatagtttggatccactgatatattattcagcataatttggagttacttatacttggag |
215 |
Q |
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| T |
36136352 |
acagaagtattgcaatgttgagttaggcatctaaaatttgcaatagtttggatccactgatatattattcagcataatttggagttacttatgcttggag |
36136253 |
T |
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| Q |
216 |
attttgtttatcaaaattacattaatgggagaaaatacatttattaatttatcaagcaaaatat |
279 |
Q |
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| T |
36136252 |
attttgtttatcaaaattacattaatgggagaaaatacatttattaatttatcaaacaaaatat |
36136189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 41337843 - 41337746
Alignment:
| Q |
141 |
ggcatctaaaatttgcaatagtttggatccactgatatattattcagcataatttggagttacttatacttggagattttgtttatcaaaattacatt |
238 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |
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| T |
41337843 |
ggcatccaaaatttgcaattgtttggatccactgatatattatttagcataatttggagttatgtatacttagagattttgttcatcaaaattacatt |
41337746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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