View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20132_high_6 (Length: 257)

Name: NF20132_high_6
Description: NF20132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20132_high_6
NF20132_high_6
[»] chr2 (2 HSPs)
chr2 (17-239)||(38191938-38192165)
chr2 (117-178)||(6632945-6633006)
[»] chr1 (4 HSPs)
chr1 (115-177)||(13810178-13810239)
chr1 (140-192)||(22867076-22867128)
chr1 (137-180)||(47443520-47443563)
chr1 (77-149)||(52263791-52263862)
[»] chr8 (1 HSPs)
chr8 (114-179)||(6021826-6021891)
[»] chr3 (1 HSPs)
chr3 (117-158)||(22345778-22345819)
[»] scaffold0022 (1 HSPs)
scaffold0022 (117-157)||(144881-144921)
[»] chr5 (3 HSPs)
chr5 (118-150)||(6507888-6507920)
chr5 (140-192)||(8585331-8585383)
chr5 (133-181)||(10809520-10809568)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 38191938 - 38192165
Alignment:
Q  17 agaaagttaataatgaatgaaaaatgagataccacgatttaatatatgtttgaatttttggtgagattgacagaattacaacaaaccaccacgattgtgg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38191938 agaaagttaataatgaatgaaaaatgagataccacgatttaatatatgtttgaatttttggtgagattgacagaattacaacaaaccaccacgattctgg 38192037  T
Q  117 caaaaactacacttcaaagcttcaacaaaatcacgatgtcactataatttt-gccaaactcaccgctcattcaaacacacatc----gtaaacaaataga 211  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||  ||||||||||||||||||||||||||||||    |||||||||||||    
T  38192038 caaaaactacacttcaaagcttcaacaaaatcacaatgtcactgtaattttacccaaactcaccgctcattcaaacacacatcaagtgtaaacaaataga 38192137  T
Q  212 aacttcaattcttgtagttctagatatt 239  Q
    ||||||||||||||||||||||||||||    
T  38192138 aacttcaattcttgtagttctagatatt 38192165  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 6632945 - 6633006
Alignment:
Q  117 caaaaactacacttcaaagcttcaacaaaatcacgatgtcactataattttgccaaactcac 178  Q
    ||||| |||||||| |||| ||||||||||||||||| |||| || ||||||||| ||||||    
T  6632945 caaaagctacactttaaagattcaacaaaatcacgatatcaccatgattttgccagactcac 6633006  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 13810239 - 13810178
Alignment:
Q  115 ggcaaaaactacacttcaaagcttcaacaaaatcacgatgtcactataattttgccaaactca 177  Q
    ||||||||||||||||  |||||||||||||||||||| |||||  |||||||||||||||||    
T  13810239 ggcaaaaactacactttgaagcttcaacaaaatcacgacgtcac-ctaattttgccaaactca 13810178  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 22867128 - 22867076
Alignment:
Q  140 aacaaaatcacgatgtcactataattttgccaaactcaccgctcattcaaaca 192  Q
    |||||||| || ||||||||||||||||| |||||||| || |||||||||||    
T  22867128 aacaaaattacaatgtcactataattttgtcaaactcatcgttcattcaaaca 22867076  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 47443520 - 47443563
Alignment:
Q  137 ttcaacaaaatcacgatgtcactataattttgccaaactcaccg 180  Q
    |||||||||||||||||| |||||| ||| ||||||||||||||    
T  47443520 ttcaacaaaatcacgatgacactatgattctgccaaactcaccg 47443563  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 52263862 - 52263791
Alignment:
Q  77 gtgagattgacagaattacaacaaaccaccacgattgtggcaaaaactacacttcaaagcttcaacaaaatca 149  Q
    ||||||||| |||||| ||||  | ||||||||||| ||||||| |||  |||||| ||||||||||||||||    
T  52263862 gtgagattggcagaatcacaatgagccaccacgatt-tggcaaacactgtacttcagagcttcaacaaaatca 52263791  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 6021891 - 6021826
Alignment:
Q  114 tggcaaaaactacacttcaaagcttcaacaaaatcacgatgtcactataattttgccaaactcacc 179  Q
    ||||||||||||||||| | ||||||||| |||||| | || |||  |||||||| ||||||||||    
T  6021891 tggcaaaaactacactttagagcttcaaccaaatcatggtggcacggtaattttgtcaaactcacc 6021826  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 22345778 - 22345819
Alignment:
Q  117 caaaaactacacttcaaagcttcaacaaaatcacgatgtcac 158  Q
    |||||| |||||||| ||||||||||||||||||| ||||||    
T  22345778 caaaaattacacttcgaagcttcaacaaaatcacggtgtcac 22345819  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 144881 - 144921
Alignment:
Q  117 caaaaactacacttcaaagcttcaacaaaatcacgatgtca 157  Q
    ||||| |||||||||||| |||||||||||||||| |||||    
T  144881 caaaatctacacttcaaaacttcaacaaaatcacggtgtca 144921  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 6507888 - 6507920
Alignment:
Q  118 aaaaactacacttcaaagcttcaacaaaatcac 150  Q
    ||||||||||||||| |||||||||||||||||    
T  6507888 aaaaactacacttcagagcttcaacaaaatcac 6507920  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 8585383 - 8585331
Alignment:
Q  140 aacaaaatcacgatgtcactataattttgccaaactcaccgctcattcaaaca 192  Q
    |||||||||||||| |||||| ||||||| ||||||||| ||| || ||||||    
T  8585383 aacaaaatcacgatatcactacaattttgtcaaactcactgcttatccaaaca 8585331  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 10809568 - 10809520
Alignment:
Q  133 aagcttcaacaaaatcacgatgtcactataattttgccaaactcaccgc 181  Q
    ||||||||||||||||||| |||| || | |||||||||||| ||||||    
T  10809568 aagcttcaacaaaatcacggtgtccctgtgattttgccaaacccaccgc 10809520  T

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