View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20132_low_1 (Length: 530)
Name: NF20132_low_1
Description: NF20132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20132_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 15 - 502
Target Start/End: Complemental strand, 35109683 - 35109196
Alignment:
| Q |
15 |
aagaatgagtgatatatttaatgttattgtcaccagtaagtgttctcatttcatttcatggtttacaagacatgcctaagtgactctcatctatttccca |
114 |
Q |
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| T |
35109683 |
aagaatgagtgatatatttaatgttattgtcaccagtaagtgttctcatttcatttcatggtttacaagacatgcctaagtgactctcatctatttccca |
35109584 |
T |
|
| Q |
115 |
tatttgtagctaaagttgctgtttggtgtattggacctatttttaacttctattttattgatcatcaccgagaaacacttctattttacaatcaccatga |
214 |
Q |
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| T |
35109583 |
tatttgtagctaaagttgctgcttggtgtattggacctattttaaacttctattttattgatcatcaccgagaaacacttctattttacaatcaccatga |
35109484 |
T |
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| Q |
215 |
agaattttaaagcattcaacgactttcttcttgggtgaaatttaccgaaccatgaatgtccttgtgaatgcattctttctagcaagtgccaaggccgcct |
314 |
Q |
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| T |
35109483 |
agaattttaaagcattcaacgactttcttcttgggtgaaatttaccgaaccatgaatgtccttgtgaatgcattctttctagcaagtgccaaggccgcct |
35109384 |
T |
|
| Q |
315 |
caattcaacttagattgcccttatcaacattctacctcctaagtcatcggtcctgatcaacatctacttcagtttcgcttgaagtgctcgtatgtacatc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35109383 |
caattcaacttagattgcccttatcaacattctacctcctaagtcatcggtcctgatcaacatctacttcagtttcgcttgaagtgctcgtatgtacatc |
35109284 |
T |
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| Q |
415 |
ccttccatcgaaatgaggcggtggcttagcacaaccaagtagcaatggtacacattccgaattcaggcacatatgcttcagtcaactc |
502 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35109283 |
ccttccatcgaaatgaggtggtggcttagcacaaccaagtagcaatggtacacattccgaatccaggcacatatgcttcagtcaactc |
35109196 |
T |
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