View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20132_low_11 (Length: 213)

Name: NF20132_low_11
Description: NF20132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20132_low_11
NF20132_low_11
[»] chr2 (3 HSPs)
chr2 (15-198)||(13448597-13448780)
chr2 (13-198)||(13440434-13440619)
chr2 (15-195)||(13455071-13455251)
[»] chr7 (1 HSPs)
chr7 (21-194)||(3417295-3417468)
[»] chr5 (2 HSPs)
chr5 (46-198)||(28385568-28385720)
chr5 (13-198)||(12540919-12541104)
[»] scaffold0536 (1 HSPs)
scaffold0536 (82-198)||(6337-6453)
[»] chr4 (2 HSPs)
chr4 (82-198)||(48958381-48958497)
chr4 (120-198)||(48912209-48912287)
[»] chr6 (2 HSPs)
chr6 (13-195)||(12589926-12590108)
chr6 (86-198)||(12483294-12483406)
[»] chr8 (1 HSPs)
chr8 (60-147)||(12641285-12641372)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 13448780 - 13448597
Alignment:
Q  15 cagagaggggaaatgagggtgctgcgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 114  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448780 cagagaggggaaatgagggtgctgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 13448681  T
Q  115 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctga 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448680 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctga 13448597  T

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Target: chr2; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 13440619 - 13440434
Alignment:
Q  13 agcagagaggggaaatgagggtgctgcgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagc 112  Q
    ||||||||||||||| ||||||| || |||  |||||||  || ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  13440619 agcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatatgttttggaagc 13440520  T
Q  113 atcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctga 198  Q
    ||||||||||| ||||||||||||||||| |||||||| || || |||||||||||  ||||||||||||||||||||||||||||    
T  13440519 atcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcctga 13440434  T

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Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 13455251 - 13455071
Alignment:
Q  15 cagagaggggaaatgagggtgctgcgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 114  Q
    ||||||||||||| |||| |  || |||||| |||||| ||||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||||||    
T  13455251 cagagaggggaaacgaggtttttgtgaatgtacacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagcat 13455152  T
Q  115 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcc 195  Q
    ||| ||||  ||| ||||||||||||| |||||||||||  |  |||||||| | ||||| || |||||||||||||||||    
T  13455151 caattattcatctaataaacaactatatgagatggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttcc 13455071  T

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Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 3417295 - 3417468
Alignment:
Q  21 ggggaaatgagggtgctgcgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcatcaacta 120  Q
    ||||||| |||||||||| || || ||| ||| ||||| |||||||| | ||| |   |||||||||||||||||||||||||||||||||| | |||||    
T  3417295 ggggaaacgagggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaacta 3417394  T
Q  121 tttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttc 194  Q
    ||| ||||||||||||||||| ||||| ||||  || ||||||||||| |||||||||||||||||||||||||    
T  3417395 tttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttc 3417468  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 198
Target Start/End: Complemental strand, 28385720 - 28385568
Alignment:
Q  46 gcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgag 145  Q
    ||||||| ||||||  |||||| | ||| || |||||||||||||  |||||||||||||||||||||| ||| |||| ||||||||||||||||| |||    
T  28385720 gcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgag 28385621  T
Q  146 atggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctga 198  Q
    || ||||| ||  |||||||||| |||||||||||||||||||||||||||||    
T  28385620 attgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcctga 28385568  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 12541104 - 12540919
Alignment:
Q  13 agcagagaggggaaatgagggtgctgcgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagc 112  Q
    ||||| |||||||||||||||||||||||  | |||||||  ||| || |||||| | ||| ||  ||||||||||||| ||||||||||||||||||||    
T  12541104 agcagggaggggaaatgagggtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagc 12541005  T
Q  113 atcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctga 198  Q
    || ||  |||| | ||| ||||||||||| ||||| ||||||||  |||||| |   |||||||||||||||||||||||||||||    
T  12541004 ataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgttcctga 12540919  T

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Target: scaffold0536 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 6337 - 6453
Alignment:
Q  82 taactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattc 181  Q
    ||||||||||||||||||||| ||||||||| |   |  |||  | ||||||||||| |||||||| ||||||| |||||||||||| ||||||  ||||    
T  6337 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 6436  T
Q  182 atatgggttgttcctga 198  Q
    |||||||||||||||||    
T  6437 atatgggttgttcctga 6453  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 48958497 - 48958381
Alignment:
Q  82 taactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattc 181  Q
    ||||||||||||||||||||| |||||||||||    ||||| |||||||||||||| || ||||| || |||| |||||||||||| ||||||  |||     
T  48958497 taactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaattt 48958398  T
Q  182 atatgggttgttcctga 198  Q
     ||||||||||||||||    
T  48958397 gtatgggttgttcctga 48958381  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 48912209 - 48912287
Alignment:
Q  120 atttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctga 198  Q
    ||||||| ||||||||||| || ||||| || || | ||| ||||||||  |||||  |||||||||||||||||||||    
T  48912209 atttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctga 48912287  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 12589926 - 12590108
Alignment:
Q  13 agcagagaggggaaatgagggtgctgcgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagc 112  Q
    |||||| |||||||||||| ||| || ||| ||||| ||| | |||||||||||  | ||  || ||| |||||| |||||||||||||| ||||| |||    
T  12589926 agcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagc 12590025  T
Q  113 atcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcc 195  Q
    ||   |||||| || ||||||||||| || |||||  | ||||  ||||||||||| || |||  |||| |||||||| ||||    
T  12590026 atatgctatttctcagataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcc 12590108  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 12483294 - 12483406
Alignment:
Q  86 tcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatat 185  Q
    ||||||||||||||||| ||||| ||| |   | |||| ||||||||||| || ||||| ||  |||| |  ||||||||||| ||| |   ||||||||    
T  12483294 tcagtgttgtacatatgctttgggagcctatgcaatttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatat 12483393  T
Q  186 gggttgttcctga 198  Q
    |||||||||||||    
T  12483394 gggttgttcctga 12483406  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 12641285 - 12641372
Alignment:
Q  60 gttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagat 147  Q
    |||||||| ||||| ||  || ||| |||||||| |||||||||||||| ||||||   ||||| |||||||||||||| ||||||||    
T  12641285 gttggctcaattcaaagcaagataattcagtgttatacatatgttttgggagcatctcttatttctctgataaacaactttacgagat 12641372  T

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