View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20132_low_3 (Length: 400)

Name: NF20132_low_3
Description: NF20132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20132_low_3
NF20132_low_3
[»] chr2 (3 HSPs)
chr2 (29-387)||(43613139-43613495)
chr2 (130-161)||(5701295-5701326)
chr2 (225-290)||(21938137-21938200)
[»] chr6 (1 HSPs)
chr6 (163-225)||(19345751-19345813)
[»] chr8 (1 HSPs)
chr8 (183-256)||(21367027-21367097)
[»] scaffold0027 (1 HSPs)
scaffold0027 (163-225)||(8115-8177)
[»] scaffold0421 (1 HSPs)
scaffold0421 (131-162)||(2438-2469)
[»] chr1 (2 HSPs)
chr1 (175-225)||(35272453-35272503)
chr1 (177-225)||(21516474-21516522)
[»] chr7 (1 HSPs)
chr7 (163-224)||(19087445-19087506)
[»] chr3 (1 HSPs)
chr3 (125-162)||(41236059-41236096)
[»] chr4 (1 HSPs)
chr4 (125-161)||(47987084-47987120)


Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 29 - 387
Target Start/End: Original strand, 43613139 - 43613495
Alignment:
Q  29 actgctttttagagtgaagagtacttcacaattttttaacggcataaggcaatctgtcacaaaaataaaactcaaccagcttgtagctgtttgtgataaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43613139 actgctttttagagtgaagagtacttcacaattttttaacggcataaggcaatctgtcacaaaaataaaactcaaccagcttgtagctgtttgtgataaa 43613238  T
Q  129 acttataacttatcattttttatctcaattttatttttatcaaaagctacaaattcaatcagttaacttatcctttatcaactataagctagcttattat 228  Q
    ||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  43613239 acttc--acttatcattttttatctcaattttatttttatcaaaggctacaaattcaatcagttaacttatccgttatcaactataagctagcttcttat 43613336  T
Q  229 aagtcatctgttataaattagcttatcaagtatctcctatttattttgccaaacataacattagtcttaacattttcatactagggacattaattattct 328  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43613337 aagtcatctgttataagttagcttatcaagtatctcctatttattttgccaaacataacattagtcttaacattttcatactagggacattaattattct 43613436  T
Q  329 attataatgagttatagacaaatttgtcaatattggtcaagagtcctactttggaagta 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43613437 attataatgagttatagacaaatttgtcaatattggtcaagagtcctactttggaagta 43613495  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 161
Target Start/End: Original strand, 5701295 - 5701326
Alignment:
Q  130 cttataacttatcattttttatctcaatttta 161  Q
    ||||||||||||||||||||||||||||||||    
T  5701295 cttataacttatcattttttatctcaatttta 5701326  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 21938137 - 21938200
Alignment:
Q  225 ttataagtcatctgttataaattagcttatcaagtatctcctatttattttgccaaacataacatt 290  Q
    |||||||||||||||||||||||||||||| || ||||  |||||  |||| ||||||| ||||||    
T  21938137 ttataagtcatctgttataaattagcttataaaatatccgctatt--ttttaccaaacaaaacatt 21938200  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 19345813 - 19345751
Alignment:
Q  163 ttttatcaaaagctacaaattcaatcagttaacttatcctttatcaactataagctagcttat 225  Q
    ||||||||||  |||||| ||||||||| | |||||||| |||||||||||||||||||||||    
T  19345813 ttttatcaaatactacaagttcaatcagctgacttatccattatcaactataagctagcttat 19345751  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 21367097 - 21367027
Alignment:
Q  183 tcaatcagttaacttatcctttatcaactataagctagcttattataagtcatctgttataaattagcttatca 256  Q
    ||||||||||| ||||||| |||||| |||||||||||   |||||||||||||   |||||||||||||||||    
T  21367097 tcaatcagttagcttatccattatcagctataagctag---attataagtcatcctctataaattagcttatca 21367027  T

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Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 8115 - 8177
Alignment:
Q  163 ttttatcaaaagctacaaattcaatcagttaacttatcctttatcaactataagctagcttat 225  Q
    ||||||||||  ||||||||||||||| ||||||||||| ||||||||| |||  ||||||||    
T  8115 ttttatcaaacactacaaattcaatcaattaacttatccattatcaactgtaaaatagcttat 8177  T

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Target: scaffold0421 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 162
Target Start/End: Complemental strand, 2469 - 2438
Alignment:
Q  131 ttataacttatcattttttatctcaattttat 162  Q
    ||||||||||||||||||||||||||||||||    
T  2469 ttataacttatcattttttatctcaattttat 2438  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 35272503 - 35272453
Alignment:
Q  175 ctacaaattcaatcagttaacttatcctttatcaactataagctagcttat 225  Q
    |||||||||||||||| || ||||||| |||| | ||||||||||||||||    
T  35272503 ctacaaattcaatcagctagcttatccgttattagctataagctagcttat 35272453  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 21516522 - 21516474
Alignment:
Q  177 acaaattcaatcagttaacttatcctttatcaactataagctagcttat 225  Q
    |||||||||||||| || |||||||  ||||| ||||||||||||||||    
T  21516522 acaaattcaatcagctagcttatccactatcatctataagctagcttat 21516474  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 19087445 - 19087506
Alignment:
Q  163 ttttatcaaaagctacaaattcaatcagttaacttatcctttatcaactataagctagctta 224  Q
    ||||||||||  ||| ||||||||||| ||||||||| | |||||| |||||| ||||||||    
T  19087445 ttttatcaaatactataaattcaatcatttaacttattcgttatcacctataaactagctta 19087506  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 41236059 - 41236096
Alignment:
Q  125 taaaacttataacttatcattttttatctcaattttat 162  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  41236059 taaaacttttaacttatcattatttatctcaattttat 41236096  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 47987120 - 47987084
Alignment:
Q  125 taaaacttataacttatcattttttatctcaatttta 161  Q
    ||||||||||||||||||||||||  |||||||||||    
T  47987120 taaaacttataacttatcatttttcctctcaatttta 47987084  T

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