View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20132_low_5 (Length: 342)
Name: NF20132_low_5
Description: NF20132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20132_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 48954558 - 48954651
Alignment:
| Q |
232 |
tccaatatatatgttaaataaaccaagatttaatctccatactaaaagtaaaaccacaataattactaaattagttcttcgttgtcttcaatct |
325 |
Q |
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| T |
48954558 |
tccaatatatatgttaaataaaccaagatttaatctccatactaaaattaaaaccacaataattactaaattagttcttcgttgtcttcaatct |
48954651 |
T |
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Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 48954472 - 48954553
Alignment:
| Q |
85 |
ctggtttattacaaagccacgtacgtcagtatcgttttgaagggaaaaaaccttcctttacatagctcggtcctctatatat |
166 |
Q |
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| T |
48954472 |
ctggtttgttacaaagccacgtacgtcagtatcgttttgaagggaaaaaaccttcctttacatagctccgtcctctatatat |
48954553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 325
Target Start/End: Complemental strand, 1116587 - 1116494
Alignment:
| Q |
226 |
tcaaaatccaatatatatgttaaataaaccaagatttaatctccatactaaaagtaaaaccacaataattactaaattagttcttcgttgtcttcaatct |
325 |
Q |
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| T |
1116587 |
tcaaaatccaatgtatatgttaaatacaccaaaatttattctccatact-aaagt-----cacaataatcactaaattagttcttcgttaacttcaatct |
1116494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 1116764 - 1116678
Alignment:
| Q |
119 |
ttttgaagggaaaaaaccttcctttacatagctcggtcctcta--tatattattccccctacctgaaaataaaagtataaatcataca |
204 |
Q |
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| T |
1116764 |
ttttgaagggaaaaagctatcctttacatagatcaatcctctacatatattattactc-tacctgaaaataaaagtattaatcataca |
1116678 |
T |
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