View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20132_low_6 (Length: 323)
Name: NF20132_low_6
Description: NF20132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20132_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 9873893 - 9874190
Alignment:
| Q |
16 |
caaatgccccatgatagcgccaaaacagcccccacagcaaggtacgaccagcattgaaaataagcaccaaaatcgaaacagcagctatagccctccacct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9873893 |
caaatgccccatgatagcgccaaaacagcccccacagcaaggtacgaccagcattgaaaataagcaccaaaatcgaaacagcagctatagccctccacct |
9873992 |
T |
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| Q |
116 |
ccttaagaacgaaattacctcgtgagtcaatcccttcttatcaattttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9873993 |
ccttaagaacgaaattacctcgtgagtcaatcccttcttatcaattttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccata |
9874092 |
T |
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| Q |
216 |
ttatcaatctcccaaagcttgttgaaaatccactcatttcttgttttctaaataacccaaattgttacattccaaattagccaaaattcacgcctttg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9874093 |
ttatcaatctcccaaagcttgttgaaaatccactcatttcttgttttctaaataacccaaattgttacatgccaaattagccaaaattcacgcctttg |
9874190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 51170299 - 51170356
Alignment:
| Q |
160 |
ttttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccatatt |
217 |
Q |
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||||||||| || |||||| |||||||||||||||||||| ||||| ||||||||||| |
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| T |
51170299 |
ttttcattcaacgcaaactccaataccaagacatcaccttgatttggtccaccatatt |
51170356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 17264212 - 17264282
Alignment:
| Q |
157 |
caattttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccatattatcaatctcc |
227 |
Q |
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| T |
17264212 |
caattttctttctactcaaactccaatactaggacattgccttaacttgttccaccatattatccatctcc |
17264282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 235097 - 235040
Alignment:
| Q |
160 |
ttttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccatatt |
217 |
Q |
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|||||||| ||| |||||| |||||||||||||||||||| ||||| || |||||||| |
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| T |
235097 |
ttttcattatacgcaaactccaataccaagacatcaccttgatttggtctaccatatt |
235040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 711508 - 711451
Alignment:
| Q |
160 |
ttttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccatatt |
217 |
Q |
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|||||||| ||| |||||| |||||||||||||||||||| ||||| || |||||||| |
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| T |
711508 |
ttttcattatacgcaaactccaataccaagacatcaccttgatttggtctaccatatt |
711451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 872615 - 872558
Alignment:
| Q |
160 |
ttttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccatatt |
217 |
Q |
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|
|||||||| ||| |||||| |||||||||||||||||||| ||||| || |||||||| |
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| T |
872615 |
ttttcattatacgcaaactccaataccaagacatcaccttgatttggtctaccatatt |
872558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 748720 - 748665
Alignment:
| Q |
160 |
ttttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccata |
215 |
Q |
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|
|||||||| ||| |||||| |||||||||||||||||||| ||||| || |||||| |
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| T |
748720 |
ttttcattatacgcaaactccaataccaagacatcaccttgatttggtctaccata |
748665 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 804955 - 804900
Alignment:
| Q |
160 |
ttttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccata |
215 |
Q |
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|||||||| ||| |||||| |||||||||||||||||||| ||||| || |||||| |
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| T |
804955 |
ttttcattatacgcaaactccaataccaagacatcaccttgatttggtctaccata |
804900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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