View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20133_high_1 (Length: 742)
Name: NF20133_high_1
Description: NF20133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20133_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 15 - 723
Target Start/End: Complemental strand, 40308238 - 40307531
Alignment:
| Q |
15 |
atgaaacatgagagtgatgatgactgttgtattgaatttcagtaatatgaggtttacatgtaaagagatacttcaaagttattgttctggaaataacact |
114 |
Q |
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| T |
40308238 |
atgaaacatgagagtgatgatgactgttgtattgaatttcagtaatatgaggtttacatgcaaagagatacttcaaagttattgttctggaaataacact |
40308139 |
T |
|
| Q |
115 |
tgcattattataattatattgttgttaattatacgaagactaatagtggtcttcattatttgatcaaatcgtgctaggactagttccacctgagatctaa |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40308138 |
tgcattattataat-atattgttgttaattatacgaagactaatagcagtcttcattatttgatcaaatcgtgctaggactagttccacctgagatctaa |
40308040 |
T |
|
| Q |
215 |
tctttcctccaannnnnnnnnnnnnnnnnnnnnnagtagaaagattgaaagaaggcaaatcaaaatccacaagtatccatgtttaacccaaatacttcat |
314 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40308039 |
tctttcctccaatttttggctttttaatttttttagtagaaagattgaaagaaggcaaatcaaaatccacaagtatccatgtttaacccaaatacttcat |
40307940 |
T |
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| Q |
315 |
gtgtaaaaatatagattattgagaatggtgatatcgaagaactacatgagttaggatctggaacctttggaaccgtgtatcatggcaaatggaggggaac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40307939 |
gtgtaaaaatatagattattgagaatggtgatatcgaagaactacatgagttaggatctggaacctttggaaccgtgtatcatggcaaatggaggggaac |
40307840 |
T |
|
| Q |
415 |
agatgttgcaattaagagaataaaaaatagttgttttgctggtagattttccgagcaagagcggttggtaagtatctattgagtataaagtataaacaaa |
514 |
Q |
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| T |
40307839 |
agatgttgcaattaagagaataaaaaatagttgttttgctggtagattttccgagcaagagcggttggtaagtatccattgagtataaagtataaacaaa |
40307740 |
T |
|
| Q |
515 |
ttgaatttattagtgttgtttatttagtttttctttcaaacttatattataaaatttcttataaaaagttattcatggaaaagtgcttccatgatgaatg |
614 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40307739 |
ttgactttattagtgttgtttatttagtttttctttcaaacttatattataaaatttcttataaaaagttattcatggtaaagtgcttccatgatgaatg |
40307640 |
T |
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| Q |
615 |
aatggggaagggaaaatctcatatttacaggccattaacattaattcacatataattatttttctgtatgaggtttcttagttatatgcttattgagttt |
714 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40307639 |
aatggggaagggaaaatctcatatttacaggccattaacattaattcacatataattatttttctgtatgaggtttcttagttatatgcttattgagttt |
40307540 |
T |
|
| Q |
715 |
gtttctcta |
723 |
Q |
| |
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||||||||| |
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| T |
40307539 |
gtttctcta |
40307531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 456
Target Start/End: Original strand, 48271225 - 48271310
Alignment:
| Q |
371 |
tctggaacctttggaaccgtgtatcatggcaaatggaggggaacagatgttgcaattaagagaataaaaaatagttgttttgctgg |
456 |
Q |
| |
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||||| ||||||||||| || |||||||| |||||||||||||| ||||||||||| ||| |||||| |||| ||||||||||| |
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| T |
48271225 |
tctggtacctttggaactgtttatcatggaaaatggaggggaactgatgttgcaatcaagcgaataactgatagatgttttgctgg |
48271310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 447
Target Start/End: Original strand, 16018572 - 16018653
Alignment:
| Q |
366 |
taggatctggaacctttggaaccgtgtatcatggcaaatggaggggaacagatgttgcaattaagagaataaaaaatagttg |
447 |
Q |
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|||| ||||| || ||||| || ||||||||||| |||||||| |||||||||||||| || || |||||||| || ||||| |
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| T |
16018572 |
taggttctggtacatttgggactgtgtatcatggaaaatggagaggaacagatgttgctatcaaaagaataaagaagagttg |
16018653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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