View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20133_low_2 (Length: 618)
Name: NF20133_low_2
Description: NF20133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20133_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 64 - 400
Target Start/End: Original strand, 28739898 - 28740228
Alignment:
| Q |
64 |
ttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaacc |
163 |
Q |
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|||||||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28739898 |
ttaataaaataaaggcgagtcacgtacttcctatgataggcttctagaccaaatgtggggaagtttgcaaatccacaagcatcaccagcagtgaaaaacc |
28739997 |
T |
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| Q |
164 |
attggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgtt |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28739998 |
attggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgtt |
28740097 |
T |
|
| Q |
264 |
gataagatgagctgttgcggtaccacttggatatgtcaatccgaagtcaacaatcataatctgcaaaagggaaacattaaattaaaactaaatgtttgga |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28740098 |
gataagatgagctgttgcggtaccacttggatatgtcaatccgaagtcaacaatcataatctgcaaaagggaaacattaaattaaaac------tttgga |
28740191 |
T |
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| Q |
364 |
ctcattcccatcccatgttttaaaaatcgattcaaac |
400 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
28740192 |
ctcattcccatcccatgttttaaaaattgattcaaac |
28740228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 64 - 375
Target Start/End: Original strand, 28749840 - 28750151
Alignment:
| Q |
64 |
ttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaacc |
163 |
Q |
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|||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28749840 |
ttaataaaataaaggcgagtcacgtacttcctatgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaacc |
28749939 |
T |
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| Q |
164 |
attggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgtt |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28749940 |
attggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgtt |
28750039 |
T |
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| Q |
264 |
gataagatgagctgttgcggtaccacttggatatgtcaatccgaagtcaacaatcataatctgcaaaagggaaacattaaattaaaactaaatgtttgga |
363 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28750040 |
gataagatgagctgttgctgtaccacttggatatgtcaatccgaagtcaacaatcataatctgcaaaagggaaacattaaattaaaactaaatgtttgga |
28750139 |
T |
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| Q |
364 |
ctcattcccatc |
375 |
Q |
| |
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||||||| |||| |
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| T |
28750140 |
ctcattctcatc |
28750151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 53 - 281
Target Start/End: Original strand, 28753848 - 28754076
Alignment:
| Q |
53 |
aaattctctcgttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagc |
152 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28753848 |
aaattctctcattaataaaataaaggcgagttacgtacatgttttgatatgcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagc |
28753947 |
T |
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| Q |
153 |
agtgaaaaaccattggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgta |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28753948 |
agtgaaaaaccattggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgta |
28754047 |
T |
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| Q |
253 |
tggaaactgttgataagatgagctgttgc |
281 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28754048 |
tggaaactgttgataagatgagctgttgc |
28754076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 28740444 - 28740501
Alignment:
| Q |
545 |
tgatgcaacaagttagtgtacctttcggagtggaaccactgaaaagagaccaagaaag |
602 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28740444 |
tgatgcaacaagttagtgtacctttcggagtggaagcactgaaaagagaccaagaaag |
28740501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 554 - 602
Target Start/End: Original strand, 28750225 - 28750273
Alignment:
| Q |
554 |
aagttagtgtacctttcggagtggaaccactgaaaagagaccaagaaag |
602 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28750225 |
aagttagtgtacctttcggagtggaagcactgaaaagagaccaagaaag |
28750273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 500
Target Start/End: Original strand, 28750153 - 28750226
Alignment:
| Q |
433 |
tatagttcattcatatcaaagatatatgtc-----atgcaagcaaatatttcaattcaaaa-tcaaataattaa |
500 |
Q |
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||||||||||||||| ||||||||||||| |||||| ||||||||||||| ||||| |||||||||||| |
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| T |
28750153 |
tatagttcattcatagaaaagatatatgtcatgcaatgcaaacaaatatttcaatgcaaaattcaaataattaa |
28750226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 54 - 329
Target Start/End: Complemental strand, 39943066 - 39942791
Alignment:
| Q |
54 |
aattctctcgttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagca |
153 |
Q |
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|||||| || ||||||||||||||||| || || ||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
39943066 |
aattctatcattaataaaataaaggcgggtcacttacttcctttgataggcttctagaccaaatgtgggaaagtttgtaaatccacaagaatcaccagca |
39942967 |
T |
|
| Q |
154 |
gtgaaaaaccattggaagaaaccccacaaaaagctaaaggagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtat |
253 |
Q |
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| T |
39942966 |
gcgaaaaaccattggaagaaaccccacaagaagctgaaggagaagaactttcccagtgcttttacttgcttctttgctagtttggcaccttctgatgtat |
39942867 |
T |
|
| Q |
254 |
ggaaactgttgataagatgagctgttgcggtaccacttggatatgtcaatccgaagtcaacaatcataatctgcaa |
329 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39942866 |
ggaaactgttgataagatgagctgttgcggtaccacttggatatgtcaatttgaagtcaacaatcataatctgcaa |
39942791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 39942528 - 39942471
Alignment:
| Q |
545 |
tgatgcaacaagttagtgtacctttcggagtggaaccactgaaaagagaccaagaaag |
602 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39942528 |
tgatgcaacgagttagtgtacctttcggagtggaaccactgaaaagagaccaagaaag |
39942471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 225 - 313
Target Start/End: Original strand, 29247219 - 29247307
Alignment:
| Q |
225 |
ctttgctagtttggcaccttcagatgtatggaaactgttgataagatgagctgttgcggtaccacttggatatgtcaatccgaagtcaa |
313 |
Q |
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||||||||||||||| |||| || || ||||| |||||||| |||||||| ||||| ||||||||||||||||| ||| |||||||| |
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| T |
29247219 |
ctttgctagtttggctccttgaggagtgtggaagctgttgatgagatgagcagttgcagtaccacttggatatgttaatttgaagtcaa |
29247307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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