View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20134_high_1 (Length: 573)
Name: NF20134_high_1
Description: NF20134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20134_high_1 |
 | |
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| [»] chr3 (7 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 8 - 573
Target Start/End: Original strand, 46834935 - 46835528
Alignment:
| Q |
8 |
gagcacagactaaaccagcatattttgtcacttcaggccagtcttgggaagctacaacctatatagattggaaagcaagtatcagttgcaaaaaatcctc |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
46834935 |
gagcacacactaaaccagcatattttgtcacttcaggccagtcttgggaagctacaacctatatagattggaaagcaagtatcagttacaaaaaatcctc |
46835034 |
T |
|
| Q |
108 |
aataaacattacaatgctaataaaaatcaagatgatagattagataaatacagctgccattgacgggctagagtcttctccattttcagggtgtgtaaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
46835035 |
aataaacattacaatgctaataaaaatcaagatgatagattagataaatacagctgccattgaggggctagagtcttctccattttcagggtgtgtaaca |
46835134 |
T |
|
| Q |
208 |
tctgccccaaaaattatggtcggtgtcgctaactaatggtattatgtagcttgcagcgtcaagaagaatagtgtttcttcctcccatctgcaccaagaag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
46835135 |
tctgccccaaaaattatggtcggtgtcgctaactaatggtattctgtagcttgcagcgtcaagaagaatagtgtttctccctcccatctgcaccaagaag |
46835234 |
T |
|
| Q |
308 |
aaggtaatactttttaattcttgaatgtatttatgagaattgagagaaatttgctgaaaaatcattgtagaagcaaat---------------gagagag |
392 |
Q |
| |
|
| ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
46835235 |
agggtaacactttttaattcttggatgtagttatgagaattgagagaaatttgctgaaaaatcattgtagaagcaaatgagagaggttcagtagagagag |
46835334 |
T |
|
| Q |
393 |
agtacggtggagagtgatgggggaagaagagagataattcttttttagaaaagtaagt------tgccttggaaacttgaattagttaaacg-------t |
479 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
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|
| T |
46835335 |
agtacggtggagagtcatgggggaagaagagagataattcttttttagaaaagtaagtgggtactgccttggaaacttgaattaattaaacgtgtgtact |
46835434 |
T |
|
| Q |
480 |
gtgtacaatgcaattatgatttaaaattgaaagacaacttttattggaaacagatggattgtgtggagatcaacacagatgcatctaacggcca |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||||||||||| |||| |
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|
| T |
46835435 |
gtgtacaatgcaattatgatttaaaattgaaagacaacttttattgaaaatagatggattgtgtggagatcaataaagatgcatctaacagcca |
46835528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 485 - 573
Target Start/End: Original strand, 32077379 - 32077467
Alignment:
| Q |
485 |
caatgcaattatgatttaaaattgaaagacaacttttattggaaacagatggattgtgtggagatcaacacagatgcatctaacggcca |
573 |
Q |
| |
|
||||||| || ||| || |||||||||||| |||||||| || |||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
32077379 |
caatgcagttgtgagttgaaattgaaagactttgtttattgggaatagatgggttgtgtggagatcaacacaaatgcatctaacggcca |
32077467 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 503 - 567
Target Start/End: Complemental strand, 51647034 - 51646970
Alignment:
| Q |
503 |
aaattgaaagacaacttttattggaaacagatggattgtgtggagatcaacacagatgcatctaa |
567 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||||||||||||||||| |||||| ||||||| |
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|
| T |
51647034 |
aaattgaaagacagtgtttattgggaacaaatggattgtgtggagatcaatacagattcatctaa |
51646970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 573
Target Start/End: Original strand, 5578066 - 5578120
Alignment:
| Q |
519 |
tttattggaaacagatggattgtgtggagatcaacacagatgcatctaacggcca |
573 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
5578066 |
tttattgggaacaaatggattgtgcagagatcaacacaaatgcatctaacggcca |
5578120 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 570
Target Start/End: Original strand, 45640636 - 45640678
Alignment:
| Q |
528 |
aacagatggattgtgtggagatcaacacagatgcatctaacgg |
570 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45640636 |
aacatatggattgtgtggagatcaacacagattcatctaacgg |
45640678 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 573
Target Start/End: Original strand, 4737718 - 4737772
Alignment:
| Q |
519 |
tttattggaaacagatggattgtgtggagatcaacacagatgcatctaacggcca |
573 |
Q |
| |
|
|||||||| || ||||||| || ||||||||||||||||||||||| || ||||| |
|
|
| T |
4737718 |
tttattgggaatagatggaatgggtggagatcaacacagatgcatccaatggcca |
4737772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 569
Target Start/End: Original strand, 44712447 - 44712530
Alignment:
| Q |
485 |
caatgcaattatgatttaaaattgaaagacaacttttattggaaacagatggattgtgtggagatcaacacagatgcatctaacg |
569 |
Q |
| |
|
||||||| || ||| |||||||||||| | || ||||||| || |||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
44712447 |
caatgcacttgtgacttaaaattgaaaaa-aatatttattgagaaaagatggattgtgtggagatcaacatggattcatctaacg |
44712530 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 314
Target Start/End: Complemental strand, 46376705 - 46376397
Alignment:
| Q |
8 |
gagcacagactaaaccagcatattttgtcacttcaggccagtcttgggaagctacaacctatatagattggaaagcaagtatcagttgcaaaaaatcctc |
107 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
46376705 |
gagcacacactaagccagcatattttgtcacttcaggccaatcttgggaggctacaacctatatagattggaaagcaagtctcagctgcaaaaaatcctc |
46376606 |
T |
|
| Q |
108 |
aataaacattacaatgctaataaaaatcaagatgatagattagataaatacagctgccattgacgggctagagtcttctccattttcagggtgtgtaaca |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46376605 |
aatacacattacaatgctaataaaaatcaagataatagattagataaatacagctgctattgaggggctagagtcttctccattttcagggtgtgtaaca |
46376506 |
T |
|
| Q |
208 |
tctgccccaaaaattatggtcgg--tgtcgctaactaatggtattatgtagcttgcagcgtcaagaagaatagtgtttcttcctcccatctgcaccaaga |
305 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
46376505 |
tctgctccaaaaattatggttggtatgtcgctaactaatggtattctgtagcttgcagcatcaagaagaacagtatttctccctcccatctgcaccaaga |
46376406 |
T |
|
| Q |
306 |
agaaggtaa |
314 |
Q |
| |
|
||| ||||| |
|
|
| T |
46376405 |
agagggtaa |
46376397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 155 - 308
Target Start/End: Complemental strand, 15410916 - 15410761
Alignment:
| Q |
155 |
atacagctgccattgacgggctagagtcttctccattttcagggtgtgtaacatctgccccaaaaattatggtcgg--tgtcgctaactaatggtattat |
252 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| |||| ||||| ||||||||| | |
|
|
| T |
15410916 |
atacagctgctattgaggggctggaatcttccccattttcagggtgagtaacatctgctccaaatattattgtcggtatgtcactaaccaatggtattct |
15410817 |
T |
|
| Q |
253 |
gtagcttgcagcgtcaagaagaatagtgtttcttcctcccatctgcaccaagaaga |
308 |
Q |
| |
|
| ||||| | || |||| ||||| |||||||| || |||||||||| ||| |||| |
|
|
| T |
15410816 |
gcagcttacggcatcaacaagaacggtgtttctaccccccatctgcatcaataaga |
15410761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 15411059 - 15410997
Alignment:
| Q |
8 |
gagcacagactaaaccagcatattttgtcacttcaggccagtcttgggaagctacaacctata |
70 |
Q |
| |
|
||||||| |||||||| || || ||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
15411059 |
gagcacaaactaaacctgcgtactttgtaacttcaggccaatcttgggatgctacaacctata |
15410997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 485 - 573
Target Start/End: Complemental strand, 40946878 - 40946790
Alignment:
| Q |
485 |
caatgcaattatgatttaaaattgaaagacaacttttattggaaacagatggattgtgtggagatcaacacagatgcatctaacggcca |
573 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||||||||||| ||||||||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
40946878 |
caatgcacttatgatttaaaattgaaagaaaatgtttattggaaatagatggattgtgtagagatcaacatagatttatctaacggcca |
40946790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 573
Target Start/End: Original strand, 16352068 - 16352122
Alignment:
| Q |
519 |
tttattggaaacagatggattgtgtggagatcaacacagatgcatctaacggcca |
573 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||||| | |||| ||||||||||||| |
|
|
| T |
16352068 |
tttattggaaagagatggaatgtgcggagatcaaaatagattcatctaacggcca |
16352122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 503 - 570
Target Start/End: Original strand, 52525855 - 52525922
Alignment:
| Q |
503 |
aaattgaaagacaacttttattggaaacagatggattgtgtggagatcaacacagatgcatctaacgg |
570 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52525855 |
aaattgaaagactatgttcattggaaacagatggattgtgtggtgatcaacacagatgcatctaacgg |
52525922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 519 - 567
Target Start/End: Original strand, 47965476 - 47965524
Alignment:
| Q |
519 |
tttattggaaacagatggattgtgtggagatcaacacagatgcatctaa |
567 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47965476 |
tttattcggaacagatggattgtgtggagatcaacacagatgcatctaa |
47965524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 46530765 - 46530706
Alignment:
| Q |
8 |
gagcacagactaaaccagcatattttgtcacttcaggccagtcttgggaagctacaacct |
67 |
Q |
| |
|
||||||| || || || ||||| ||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
46530765 |
gagcacataccaatcctgcatactttgtcacttctggccagtcttgggaggctacaacct |
46530706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 573
Target Start/End: Original strand, 30850098 - 30850186
Alignment:
| Q |
485 |
caatgcaattatgatttaaaattgaaagacaacttttattggaaacagatggattgtgtggagatcaacacagatgcatctaacggcca |
573 |
Q |
| |
|
||||||| || |||||||||||||||||| | |||||||| |||| || ||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
30850098 |
caatgcacttgtgatttaaaattgaaagatagtgtttattgggaacaaatagattgtgtgtagatcaacacatattgatctaacggcca |
30850186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 543
Target Start/End: Complemental strand, 26955602 - 26955544
Alignment:
| Q |
485 |
caatgcaattatgatttaaaattgaaagacaacttttattggaaacagatggattgtgt |
543 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||||||| ||||||||||||| |
|
|
| T |
26955602 |
caatgcacttatgacttaaaattgaaagaaaatgtttattggaaatagatggattgtgt |
26955544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 570
Target Start/End: Complemental strand, 26955544 - 26955495
Alignment:
| Q |
521 |
tattggaaacagatggattgtgtggagatcaacacagatgcatctaacgg |
570 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
26955544 |
tattggaaatagatggattgtgtagagatcaacatagatttatctaacgg |
26955495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 43019193 - 43019235
Alignment:
| Q |
25 |
gcatattttgtcacttcaggccagtcttgggaagctacaacct |
67 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
43019193 |
gcatactttgtcacttctggccagtcttgggaggctacaacct |
43019235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 563
Target Start/End: Complemental strand, 34008817 - 34008739
Alignment:
| Q |
485 |
caatgcaattatgatttaaaattgaaagacaacttttattggaaacagatggattgtgtggagatcaacacagatgcat |
563 |
Q |
| |
|
||||||| || ||| ||||||||||||||| ||||||| ||| ||||||||| |||||||||| ||||| |||||| |
|
|
| T |
34008817 |
caatgcagttctgacttaaaattgaaagacggtgtttattgaaaatagatggattatgtggagatctacacatatgcat |
34008739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 570
Target Start/End: Complemental strand, 26449241 - 26449176
Alignment:
| Q |
505 |
attgaaagacaacttttattggaaacagatggattgtgtggagatcaacacagatgcatctaacgg |
570 |
Q |
| |
|
||||||||| || |||||||| |||||||| ||||||||||||||||| |||| ||||||||| |
|
|
| T |
26449241 |
attgaaagaaaatgtttattgggaacagatgaattgtgtggagatcaacttagatttatctaacgg |
26449176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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