View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20134_low_2 (Length: 397)
Name: NF20134_low_2
Description: NF20134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20134_low_2 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 12 - 397
Target Start/End: Complemental strand, 38452527 - 38452144
Alignment:
| Q |
12 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaattttaatttggtcgat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
38452527 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttatacaatggccattaacaattttaatttggttgat |
38452428 |
T |
|
| Q |
112 |
aaaatattttaaattcacataattcttcaaagactaaaatatagttttgatttctataaatatgtctcgttttaattttaatctctgtaaaatannnnnn |
211 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||| | || |||||||||||||||| |||||||||||||||||||| |
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| T |
38452427 |
aaaatattttaaattcacataattcttcaaagcctaaaatatggttttggtccctgcaaatatgtctcgttttgattttaatctctgtaaaata----tt |
38452332 |
T |
|
| Q |
212 |
nnnnnnnnnnnngatccctgcaaatatatctcgtttttgtttacctttagtt--tggtggtaatttgttttcaatatgtgctgatcattcttcttcttta |
309 |
Q |
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||||| | ||||||| ||| |||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38452331 |
tttgttgtttctgatccatacaaatatgtcttgtttttgtttacctttagtttctcgtggtaatttgttttctgtatgtgctgatcattcttcttcttta |
38452232 |
T |
|
| Q |
310 |
ttacattgtttttaagaagtagtaatattttgatgtgatgggatgggatattgaaatattttcgaaaatccaacctaggcttactgct |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
38452231 |
ttacattgtttttaagaagtagtaatattttgatgtgatgggatgagatattaaaatattttcgaaaatccaacctagacttactgct |
38452144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 38170383 - 38170736
Alignment:
| Q |
12 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaattttaatttggtcgat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38170383 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaattttaatttggttgat |
38170482 |
T |
|
| Q |
112 |
aaaatattttaaattcacataattcttcaaagactaaaatatagttttgatttctataaatatgtctcgttttaattttaatctctgtaaaatannnnnn |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| |||||| | || ||||||| |||||||| ||||| || ||||||| | |
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| T |
38170483 |
aaaatattttaaattcacataattcttcaaaggctaaaatatggttttggtccctgcaaatatgcctcgttttggttttagtccctgtaaatt----ttt |
38170578 |
T |
|
| Q |
212 |
nnnnnnnnnnnngatccctgcaaatatatctcgtttttgtttacctttagtttggtggtaatttgttttcaatatgtgctgatcattcttcttctttatt |
311 |
Q |
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| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
38170579 |
tttgttgtttttggtccctggaaatatgtctcgtttttgtttacctttagtttcgtggtaatttgttttctgtatgtgctgatcattcttcttcttcatt |
38170678 |
T |
|
| Q |
312 |
acattgtttttaagaagtagtaatattttgatgtgat-gggatgggatattgaaatat |
368 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38170679 |
acattgtttttaagaagtagtaatattttgatgtgatggggatgggatattgaaatat |
38170736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 38182218 - 38182046
Alignment:
| Q |
12 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaattttaatttggtcgat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38182218 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaattttaatttggttgat |
38182119 |
T |
|
| Q |
112 |
aaaatattttaaattcacataattcttcaaagactaaaatatagttttgatttctataaatatgtctcgtttt |
184 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||| |||||||||||||||| |
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| T |
38182118 |
aaaatattttaaattcgcataattcttcaaaggctaaaatatggttttggtttctgcaaatatgtctcgtttt |
38182046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 38188913 - 38189085
Alignment:
| Q |
12 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaattttaatttggtcgat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38188913 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaattttaatttggttgat |
38189012 |
T |
|
| Q |
112 |
aaaatattttaaattcacataattcttcaaagactaaaatatagttttgatttctataaatatgtctcgtttt |
184 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||| |||||||||||||||| |
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| T |
38189013 |
aaaatattttaaattcgcataattcttcaaaggctaaaatatggttttggtttctgcaaatatgtctcgtttt |
38189085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 38209444 - 38209272
Alignment:
| Q |
12 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaattttaatttggtcgat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38209444 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaattttaatttggttgat |
38209345 |
T |
|
| Q |
112 |
aaaatattttaaattcacataattcttcaaagactaaaatatagttttgatttctataaatatgtctcgtttt |
184 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||| |||||||||||||||| |
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| T |
38209344 |
aaaatattttaaattcgcataattcttcaaaggctaaaatatggttttggtttctgcaaatatgtctcgtttt |
38209272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 38216138 - 38216310
Alignment:
| Q |
12 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaattttaatttggtcgat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38216138 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaattttaatttggttgat |
38216237 |
T |
|
| Q |
112 |
aaaatattttaaattcacataattcttcaaagactaaaatatagttttgatttctataaatatgtctcgtttt |
184 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||| |||||||||||||||| |
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| T |
38216238 |
aaaatattttaaattcgcataattcttcaaaggctaaaatatggttttggtttctgcaaatatgtctcgtttt |
38216310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 38156467 - 38156575
Alignment:
| Q |
12 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaattttaatttggtcgat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
38156467 |
tacttgcttttctctgtttatgggttcaactttttgaagtagttattgtcttgtctaatattgttacacaatggccattaacaatttaaatttggttaat |
38156566 |
T |
|
| Q |
112 |
aaaatattt |
120 |
Q |
| |
|
||||||||| |
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| T |
38156567 |
aaaatattt |
38156575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 38186181 - 38186246
Alignment:
| Q |
55 |
tattgtcttgtctaatattgttacacaatggccattaacaattttaatttggtcgataaaatattt |
120 |
Q |
| |
|
||||||| ||||||||||| ||| ||||| | |||||||||| | ||||||| |||||||||||| |
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| T |
38186181 |
tattgtcatgtctaatattattatacaatagtcattaacaatatgcatttggttgataaaatattt |
38186246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 38212176 - 38212111
Alignment:
| Q |
55 |
tattgtcttgtctaatattgttacacaatggccattaacaattttaatttggtcgataaaatattt |
120 |
Q |
| |
|
||||||| ||||||||||| ||| ||||| | |||||||||| | ||||||| |||||||||||| |
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|
| T |
38212176 |
tattgtcatgtctaatattattatacaatagtcattaacaatatgcatttggttgataaaatattt |
38212111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 34878128 - 34878066
Alignment:
| Q |
140 |
aaagactaaaatatagttttgatttctataaatatgtctcgttttaattttaatctctgtaaa |
202 |
Q |
| |
|
|||| ||||||||| |||||||| || |||||||||||||||| |||||||||||||||| |
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| T |
34878128 |
aaaggctaaaatatggttttgatccctgcaaatatgtctcgttttggttttaatctctgtaaa |
34878066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 30761002 - 30760953
Alignment:
| Q |
145 |
ctaaaatatagttttgatttctataaatatgtctcgttttaattttaatc |
194 |
Q |
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||||||||| ||||||| ||| ||||||||||||||||| ||||||||| |
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| T |
30761002 |
ctaaaatatggttttgacctctgtaaatatgtctcgttttgattttaatc |
30760953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 19297950 - 19297890
Alignment:
| Q |
142 |
agactaaaatatagttttgatttctataaatatgtctcgttttaattttaatctctgtaaa |
202 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||||||||| ||||| |||||||||| |
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| T |
19297950 |
agactaaaatatagttttggtccttgtaaatatgtctcgttttgtttttagtctctgtaaa |
19297890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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