View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20134_low_3 (Length: 350)

Name: NF20134_low_3
Description: NF20134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20134_low_3
NF20134_low_3
[»] chr4 (13 HSPs)
chr4 (117-334)||(18807504-18807720)
chr4 (1-208)||(18812575-18812781)
chr4 (1-211)||(10032592-10032799)
chr4 (61-124)||(18789271-18789334)
chr4 (195-265)||(11809969-11810039)
chr4 (196-268)||(25054147-25054219)
chr4 (129-211)||(42665175-42665257)
chr4 (128-211)||(42664919-42665002)
chr4 (216-270)||(52520484-52520537)
chr4 (1-41)||(18789234-18789274)
chr4 (6-81)||(8818662-8818737)
chr4 (161-211)||(19223142-19223192)
chr4 (207-270)||(31337743-31337806)
[»] chr6 (8 HSPs)
chr6 (1-211)||(25050849-25051059)
chr6 (201-270)||(33869173-33869241)
chr6 (201-270)||(15868319-15868387)
chr6 (201-270)||(14620438-14620506)
chr6 (33-81)||(6232808-6232856)
chr6 (216-270)||(5378615-5378668)
chr6 (216-249)||(19645593-19645626)
chr6 (147-203)||(30488430-30488486)
[»] scaffold0245 (2 HSPs)
scaffold0245 (1-270)||(11026-11291)
scaffold0245 (1-211)||(9462-9669)
[»] chr5 (6 HSPs)
chr5 (1-212)||(4897336-4897543)
chr5 (176-267)||(4895908-4895998)
chr5 (163-270)||(33689795-33689900)
chr5 (196-270)||(25502232-25502306)
chr5 (196-274)||(10412176-10412253)
chr5 (146-249)||(21637314-21637417)
[»] chr1 (5 HSPs)
chr1 (1-211)||(1284817-1285024)
chr1 (201-270)||(3284429-3284497)
chr1 (186-270)||(35891579-35891663)
chr1 (201-274)||(9311952-9312024)
chr1 (1-67)||(35891407-35891473)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-211)||(9790-9997)
[»] chr3 (6 HSPs)
chr3 (1-211)||(548082-548288)
chr3 (1-79)||(34143065-34143143)
chr3 (128-268)||(26667150-26667288)
chr3 (196-274)||(4608922-4608999)
chr3 (159-255)||(9032898-9032994)
chr3 (32-126)||(43819877-43819974)
[»] chr7 (9 HSPs)
chr7 (157-260)||(21631411-21631513)
chr7 (157-270)||(9878328-9878440)
chr7 (157-212)||(29598164-29598219)
chr7 (207-269)||(44963050-44963110)
chr7 (157-211)||(21631181-21631235)
chr7 (216-270)||(28124883-28124936)
chr7 (157-213)||(21633380-21633436)
chr7 (157-216)||(21633142-21633201)
chr7 (216-270)||(4895467-4895520)
[»] scaffold0060 (1 HSPs)
scaffold0060 (146-270)||(9138-9261)
[»] chr8 (4 HSPs)
chr8 (166-261)||(35673477-35673571)
chr8 (195-265)||(1174945-1175015)
chr8 (214-267)||(10885464-10885517)
chr8 (198-295)||(28220481-28220576)
[»] scaffold0251 (1 HSPs)
scaffold0251 (201-274)||(6149-6221)
[»] chr2 (5 HSPs)
chr2 (196-260)||(17308534-17308597)
chr2 (197-261)||(45034996-45035059)
chr2 (198-270)||(25306654-25306724)
chr2 (128-213)||(14007614-14007697)
chr2 (146-211)||(20957427-20957492)
[»] scaffold0160 (1 HSPs)
scaffold0160 (148-211)||(28399-28462)
[»] scaffold0311 (1 HSPs)
scaffold0311 (225-269)||(14975-15018)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 117 - 334
Target Start/End: Original strand, 18807504 - 18807720
Alignment:
Q  117 gagtttgtctcctaactaactcttactaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactctaatagtccc 216  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18807504 gagtttgtctcctaactaactcttactacc-taaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactctaatagtccc 18807602  T
Q  217 cctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaattaccatacaaatgaattaacaaacgnnnnnnnnntgtaaaatttg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||         |||||||||||    
T  18807603 cctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaattacaatacgaatgaattaacaaacgaaaaaaaaatgtaaaatttg 18807702  T
Q  317 gtaaccaaccaatctaac 334  Q
    ||||||||||||||||||    
T  18807703 gtaaccaaccaatctaac 18807720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 18812575 - 18812781
Alignment:
Q  1 ttcaaaggagaagtaggcattagatgtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataaccatagagtacaatattga 100  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18812575 ttcataggagaagtaggcatgagaggtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataaccatagagtacaatagtga 18812674  T
Q  101 gagatatttatagagtgagtttgtctcctaactaactctt-actaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcac 199  Q
    ||||||||||||||||||||| || || |||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  18812675 gagatatttatagagtgagttagt-tcgtaactaactcttaacta-cctaactaagtaactaaccatagtttacatattatctaattatggtttattcac 18812772  T
Q  200 tatactcta 208  Q
    |||||||||    
T  18812773 tatactcta 18812781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 10032592 - 10032799
Alignment:
Q  1 ttcaaaggagaagtaggcattagatgtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataaccatagagtacaatattga 100  Q
    |||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| | ||||||||||| |||    
T  10032592 ttcataggagaagtaggcattagaggtagaaacaaaggaatagtccttgtaattcatattgaattagaatgaaaaagataactagagagtacaatagtga 10032691  T
Q  101 gagatatttatagagtgagtttgtctcctaactaactctt-actaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcac 199  Q
    ||| ||||||||| ||||||| ||   |||||  |||||| |||| |||||||||  ||||||||||||||||||| | | |||  |||||||||||| |    
T  10032692 gagttatttatagggtgagttagt---ctaaccgactcttaacta-cctaaccaaccaactaaccatagtttacatctcaactaactatggtttattctc 10032787  T
Q  200 tatactctaata 211  Q
    ||||||||||||    
T  10032788 tatactctaata 10032799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 18789271 - 18789334
Alignment:
Q  61 gaattagattgaaaaagataaccatagagtacaatattgagagatatttatagagtgagtttgt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18789271 gaattagattgaaaaagataaccatagagtacaatattgagagatatttatagagtgagtttgt 18789334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 11809969 - 11810039
Alignment:
Q  195 ttcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaa 265  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  11809969 ttcactatactctaatagtccccctcaaacttaaaatggggaaattcaccaattttgagtttgaaatacaa 11810039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 25054219 - 25054147
Alignment:
Q  196 tcactatactctaatagtccccctcaaactcaaaa-tgggaaaattcaccaattttgagtttgaaatacaatga 268  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||    
T  25054219 tcactatactctaatagtccccctcgaactcaaaattggggaaattcaccaa-tttgagtttgaaatacaatga 25054147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 42665175 - 42665257
Alignment:
Q  129 taactaactctta-ctaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactctaata 211  Q
    ||||||||||||| ||||| ||| ||| |||||||||||| ||||||||||| |||  |||||||||||||||||| |||||||    
T  42665175 taactaactcttaactacc-taaacaaataactaaccataatttacatattaactaactatggtttattcactatattctaata 42665257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 42665002 - 42664919
Alignment:
Q  128 ctaactaactctta-ctaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactctaata 211  Q
    |||||||||||||| ||||| ||| |||  |||||||| |||||||||||||| |||  ||||||||||||| ||||||||||||    
T  42665002 ctaactaactcttaactacc-taaacaaccaactaaccgtagtttacatattaactaactatggtttattcattatactctaata 42664919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 52520537 - 52520484
Alignment:
Q  216 ccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 270  Q
    ||||||||||||||||||| ||||||||||| |||||| ||| ||||||||||||    
T  52520537 ccctcaaactcaaaatggggaaattcaccaa-tttgagcttggaatacaatgaaa 52520484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18789234 - 18789274
Alignment:
Q  1 ttcaaaggagaagtaggcattagatgtagaaacaaaagaat 41  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  18789234 ttcataggagaagtaggcattagaggtagaaacaaaagaat 18789274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 8818662 - 8818737
Alignment:
Q  6 aggagaagtaggcattagatgtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataa 81  Q
    ||||||||||||||| |||  | || ||||| ||||||||||| | ||| |||||||||||||| ||||| |||||    
T  8818662 aggagaagtaggcatgagagattgatacaaaggaataatccttatgatttatattgaattagatagaaaaggataa 8818737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 19223142 - 19223192
Alignment:
Q  161 aaccatagtttacatattatctagttatggtttattcactatactctaata 211  Q
    |||||||||||| |||||| |||  ||||||||||||||| ||||||||||    
T  19223142 aaccatagtttatatattaactaactatggtttattcactgtactctaata 19223192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 31337806 - 31337743
Alignment:
Q  207 taatagtc-cccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 270  Q
    |||||||| ||||||||||||||| |||  ||||||||||| ||| |||||||||| ||||||||    
T  31337806 taatagtcacccctcaaactcaaagtggagaaattcaccaa-tttaagtttgaaatgcaatgaaa 31337743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 25051059 - 25050849
Alignment:
Q  1 ttcaaaggagaagtaggcattagatgtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataaccatagagtacaatattga 100  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  25051059 ttcataggagaagtaggcattagaggtagaaacaaaggaataatctttgtaattcatattgaattaaattgaaaaagataaccatagagtacaatagtga 25050960  T
Q  101 gagatatttatagagtgagtttgtctcctaactaactctt-actaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcac 199  Q
     | |||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  25050959 aatatatttatagagtgagttagtctcctaactaactcttaacta-cctaaccaagtaactaaccatagtttacatattatctaactatggtttattcac 25050861  T
Q  200 tatactctaata 211  Q
    ||||||||||||    
T  25050860 tatactctaata 25050849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 33869241 - 33869173
Alignment:
Q  201 atactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  33869241 atactctaatagtccccctcaaactcaaaatgggaaaattcaccaa-tttgagtttgaaaaacaatgaaa 33869173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 15868387 - 15868319
Alignment:
Q  201 atactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 270  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  15868387 atactctaatagtccccctcaaactcaaaatggggaaattcaccaa-tttgagtttgaaaaacaatgaaa 15868319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 14620506 - 14620438
Alignment:
Q  201 atactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 270  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||||||    
T  14620506 atactctaatagtccccctcaaatttaaaatggggaaattcaccaa-tttgagtttgaaatacaatgaaa 14620438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 6232856 - 6232808
Alignment:
Q  33 caaaagaataatccttgtaattcatattgaattagattgaaaaagataa 81  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  6232856 caaaagaataatccttgtgtttcatattgaattagattgataaagataa 6232808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 5378668 - 5378615
Alignment:
Q  216 ccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 270  Q
    ||||||||||||||||||| ||||||||||| |||||| ||| ||||||||||||    
T  5378668 ccctcaaactcaaaatggggaaattcaccaa-tttgagattggaatacaatgaaa 5378615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 19645593 - 19645626
Alignment:
Q  216 ccctcaaactcaaaatgggaaaattcaccaattt 249  Q
    ||||||||||||||||||| ||||||||||||||    
T  19645593 ccctcaaactcaaaatggggaaattcaccaattt 19645626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 30488486 - 30488430
Alignment:
Q  147 ctaaccaagtaactaaccatagtttacatattatctagttatggtttattcactata 203  Q
    ||||||||  ||| ||||||| ||||||||||| |||  ||||||||||||||||||    
T  30488486 ctaaccaaccaacaaaccataatttacatattaactaactatggtttattcactata 30488430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 11291 - 11026
Alignment:
Q  1 ttcaaaggagaagtaggcattagatgtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataaccatagagtacaatattga 100  Q
    |||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||    
T  11291 ttcataggagaagtaggccttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagataactagagagtacaatagtga 11192  T
Q  101 gagatatttatagagtgagtttgtctcctaactaactctt-actaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcac 199  Q
     || ||||||||| ||||||| ||   ||||||||||||| |||| |||||||||  |||||||||||||||| || | | |||  ||||||||||||      
T  11191 tagttatttatagggtgagttagt---ctaactaactcttaacta-cctaaccaaccaactaaccatagtttatatctcaactaactatggtttattcta 11096  T
Q  200 tatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 270  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  11095 tatactctaatagtccccttcaaactcaaagtgggaaaattcaccaa-tttgagtttgaaatactatgaaa 11026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 9669 - 9462
Alignment:
Q  1 ttcaaaggagaagtaggcattagatgtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataaccatagagtacaatattga 100  Q
    |||| ||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||    
T  9669 ttcataggagaagtaggccttagaggtagaaacagaggaataatccttgtaattcatattgaattagattgaaaaagataactagagagtacaatagtga 9570  T
Q  101 gagatatttatagagtgagtttgtctcctaactaactctt-actaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcac 199  Q
     || ||||||||| ||||||| ||   ||||||||| ||| |||| |||||||||  ||||||||||||||||||| | | |||  ||||||||||||      
T  9569 tagttatttatagggtgagttagt---ctaactaacacttaacta-cctaaccaaccaactaaccatagtttacatctcaactaactatggtttattcta 9474  T
Q  200 tatactctaata 211  Q
    ||||||||||||    
T  9473 tatactctaata 9462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 4897336 - 4897543
Alignment:
Q  1 ttcaaaggagaagtaggcattagatgtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataaccatagagtacaatattga 100  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| | |||||||||||||||    
T  4897336 ttcataggagaagtaggcattagaggtagaaacaaaggaataatccttgtaattcatattgaattagaatgaaaaagctaactagagagtacaatattga 4897435  T
Q  101 gagatatttatagagtgagtttgtctcctaactaactctt-actaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcac 199  Q
    ||| ||||||||| ||||||| ||   ||||||||||||| |||| ||||| |||  |||||||||||||||||  ||||||||  ||||||||||||||    
T  4897436 gagttatttatagggtgagttagt---ctaactaactcttaacta-cctaatcaaccaactaaccatagtttac-cattatctaactatggtttattcac 4897530  T
Q  200 tatactctaatag 212  Q
    |||||||||||||    
T  4897531 tatactctaatag 4897543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 176 - 267
Target Start/End: Original strand, 4895908 - 4895998
Alignment:
Q  176 attatctagttatggtttattcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatg 267  Q
    |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  4895908 attatctaattattgtttattcacaatactctaatagtccccctcaaactcaaaatggggaaattcaccaa-tttgagtttgaaatacaatg 4895998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 270
Target Start/End: Complemental strand, 33689900 - 33689795
Alignment:
Q  163 ccatagtttacatattatctagttatggtttattcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaata 262  Q
    ||||||||||| ||||| |||  ||||||||| ||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |    
T  33689900 ccatagtttacttattaactaactatggtttaatcattatactctaatagtcccc-tcaaactcaaaatggggaaattcaccaa-tttgagtttgaaaca 33689803  T
Q  263 caatgaaa 270  Q
    ||||||||    
T  33689802 caatgaaa 33689795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 25502232 - 25502306
Alignment:
Q  196 tcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttg-aaatacaatgaaa 270  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  25502232 tcactatactctaatagtccccctcaaactcaaaatggggaaattcaccaa-tttgagtttgaaaatacaatgaaa 25502306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 274
Target Start/End: Complemental strand, 10412253 - 10412176
Alignment:
Q  196 tcactatactctaatagtccccctcaaactcaaaa-tgggaaaattcaccaattttgagtttgaaatacaatgaaattac 274  Q
    ||||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||    
T  10412253 tcactatactctaatagtccccctcaaactcaaaattgagaaaatt-accaa-tttgagtttgaaatacaatgaaattac 10412176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 146 - 249
Target Start/End: Original strand, 21637314 - 21637417
Alignment:
Q  146 cctaaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactctaatagtccccctcaaactcaaaatgggaaaattcacca 245  Q
    |||||||||  ||||||| ||||||  ||||| | |||  ||||||||||||||||||||||||||||||||||||||||||| || |  ||||||||||    
T  21637314 cctaaccaaccaactaactatagttctcatataaactaactatggtttattcactatactctaatagtccccctcaaactcaagattgagaaattcacca 21637413  T
Q  246 attt 249  Q
    ||||    
T  21637414 attt 21637417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 1285024 - 1284817
Alignment:
Q  1 ttcaaaggagaagtaggcattagatgtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataaccatagagtacaatattga 100  Q
    |||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||    
T  1285024 ttcataggagaagtaggccttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagataactagagagtacaatagtga 1284925  T
Q  101 gagatatttatagagtgagtttgtctcctaactaactctt-actaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcac 199  Q
     || ||||||||| ||||||| ||   ||||||||||||| |||| |||||||||  ||||||||||||||||||| | | |||  ||||||||||||      
T  1284924 tagttatttatagggtgagttagt---ctaactaactcttaacta-cctaaccaaccaactaaccatagtttacatctcaactaactatggtttattcta 1284829  T
Q  200 tatactctaata 211  Q
    ||||||||||||    
T  1284828 tatactctaata 1284817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 3284497 - 3284429
Alignment:
Q  201 atactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 270  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||    
T  3284497 atactctaatagtccccctcaaactcaaagtgggaaaactcaccaa-tttgagtttgaaatacaatgaaa 3284429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 35891579 - 35891663
Alignment:
Q  186 tatggtttattcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 270  Q
    |||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||||| | ||||  |||| |||||||||||||    
T  35891579 tatggtttgttcgctatactctaatagtccccctcaaactctaaatgagaaaattcacaatttttttgtttaaaatacaatgaaa 35891663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 9312024 - 9311952
Alignment:
Q  201 atactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaattac 274  Q
    ||||||||||||||||||||||||||||| |||  || |||||||| |||||||||||||||| ||||||||||    
T  9312024 atactctaatagtccccctcaaactcaaagtggagaatttcaccaa-tttgagtttgaaataccatgaaattac 9311952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 35891407 - 35891473
Alignment:
Q  1 ttcaaaggagaagtaggcattagatgtagaaacaaaagaataatccttgtaattcatattgaattag 67  Q
    |||| ||||||||||| ||| ||| || || ||||| ||||||||||||| ||| ||||||||||||    
T  35891407 ttcataggagaagtagacatgagaggttgatacaaaggaataatccttgtcatttatattgaattag 35891473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 9997 - 9790
Alignment:
Q  1 ttcaaaggagaagtaggcattagatgtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataaccatagagtacaatattga 100  Q
    |||| ||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||    
T  9997 ttcataggagaagtaggccttagaggtagaaacagaggaataatccttgtaattcatattgaattagattgaaaaagataactagagagtacaatagtga 9898  T
Q  101 gagatatttatagagtgagtttgtctcctaactaactctt-actaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcac 199  Q
     || ||||||||| ||||||| ||   ||||||||| ||| |||| |||||||||  ||||||||||||||||||| | | |||  ||||||||||||      
T  9897 tagttatttatagggtgagttagt---ctaactaacacttaacta-cctaaccaaccaactaaccatagtttacatctcaactaactatggtttattcta 9802  T
Q  200 tatactctaata 211  Q
    ||||||||||||    
T  9801 tatactctaata 9790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 548288 - 548082
Alignment:
Q  1 ttcaaaggagaagtaggcattagatgtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataaccatagagtacaatattga 100  Q
    |||| ||||||||| | |||||||  |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||| |    
T  548288 ttcataggagaagtggacattagagatagaaacaaaggaataatccttgtaattcatattgaattagaatgaaaaagataattagagagtacaatattta 548189  T
Q  101 gagatatttatagagtgagtttgtctcctaactaactctt-actaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcac 199  Q
     || ||||||||| ||||||| ||   ||||||||||||| |||| |||||||||  |||||| ||||||||||  ||||||||  |||| |||||||||    
T  548188 aagttatttatagtgtgagttagt---ctaactaactcttaacta-cctaaccaaccaactaatcatagtttac-cattatctaaatatgatttattcac 548094  T
Q  200 tatactctaata 211  Q
    |||||| |||||    
T  548093 tatactttaata 548082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 34143143 - 34143065
Alignment:
Q  1 ttcaaaggagaagtaggcattagatgtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagat 79  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34143143 ttcataggagaagtaggcattagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 34143065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 268
Target Start/End: Original strand, 26667150 - 26667288
Alignment:
Q  128 ctaactaactctta-ctaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactctaatagtccccctcaaactc 226  Q
    |||||||||||||| ||||| |||| ||  ||||||||||| ||||||||||| |||  ||||||| |||||||||||| ||||||||||||||||||||    
T  26667150 ctaactaactcttaactacc-taactaaccaactaaccataatttacatattaactaactatggttaattcactatactgtaatagtccccctcaaactc 26667248  T
Q  227 aaaatgggaaaattcaccaattttgagtttg-aaatacaatga 268  Q
      ||||| |||||||||||| |||||||||| |||||||||||    
T  26667249 --aatggaaaaattcaccaa-tttgagtttgaaaatacaatga 26667288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 274
Target Start/End: Complemental strand, 4608999 - 4608922
Alignment:
Q  196 tcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaattac 274  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||| ||||||||||    
T  4608999 tcactatactctaatagtccccctcaaactcaaaatggaaaaattcactaa-tttgagtttgagatactatgaaattac 4608922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 9032898 - 9032994
Alignment:
Q  159 ctaaccatagtttacatattatctagttatggtttattcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtt 255  Q
    ||||||||||||| ||||| | |||  |||| |||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||||    
T  9032898 ctaaccatagttttcatatcaactaactatgatttattcattatactctaatagtctccctcaaactcaaaatggagaaattcaccaaatttgagtt 9032994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 43819877 - 43819974
Alignment:
Q  32 acaaaagaataatccttgtaattcatattg--aattagattgaaaaagataaccatagagtacaatattgagagatatttata-gagtgagtttgtct 126  Q
    ||||||||||||||||| ||||||||||||  ||||||| ||||||||||||  | ||||||||  | |||| | |||||||| ||||||||| ||||    
T  43819877 acaaaagaataatccttataattcatattgaaaattagaatgaaaaagataattagagagtacagcaatgagggttatttataggagtgagttagtct 43819974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 21631411 - 21631513
Alignment:
Q  157 aactaaccatagtttacatattatctagttatggtttattcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagttt 256  Q
    ||||||||||||||||||||| | |||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21631411 aactaaccatagtttacatatcaactaacaatggtttactcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaa-tttgagttt 21631509  T
Q  257 gaaa 260  Q
    ||||    
T  21631510 gaaa 21631513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 9878328 - 9878440
Alignment:
Q  157 aactaaccatagtttacatattatctagttatggtttattcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagttt 256  Q
    |||||||||||||||| |||||| |||  |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| ||| ||||| |||    
T  9878328 aactaaccatagtttatatattaactacctatggtttattcactatactctaatagtcctcctcaaactcaaaatggggaaactcatcaa-tttgaattt 9878426  T
Q  257 gaaatacaatgaaa 270  Q
    || |||||| ||||    
T  9878427 gatatacaaagaaa 9878440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 29598164 - 29598219
Alignment:
Q  157 aactaaccatagtttacatattatctagttatggtttattcactatactctaatag 212  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  29598164 aactaaccatagtttacatattaactaactatggtttattcactatactctaatag 29598219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 44963110 - 44963050
Alignment:
Q  207 taatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaa 269  Q
    |||||| | ||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  44963110 taatagcctccctcaaactcaaaatgggaaaattcac--aatttgagtttgaaatacaatgaa 44963050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 21631181 - 21631235
Alignment:
Q  157 aactaaccatagtttacatattatctagttatggtttattcactatactctaata 211  Q
    ||||||||||||||||||||| | |||  ||||||||| ||||||||||||||||    
T  21631181 aactaaccatagtttacatatcaactaactatggtttactcactatactctaata 21631235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 28124883 - 28124936
Alignment:
Q  216 ccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 270  Q
    ||||||||||||||||||| ||||||||||| |||||| ||| ||||||||||||    
T  28124883 ccctcaaactcaaaatggggaaattcaccaa-tttgagcttggaatacaatgaaa 28124936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 21633380 - 21633436
Alignment:
Q  157 aactaaccatagtttacatattatctagttatggtttattcactatactctaatagt 213  Q
    ||||||||||||||||||||| | |||   |||||||| ||||||||||||||||||    
T  21633380 aactaaccatagtttacatatcaactaacaatggtttactcactatactctaatagt 21633436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 21633142 - 21633201
Alignment:
Q  157 aactaaccatagtttacatattatctagttatggtttattcactatactctaatagtccc 216  Q
    ||||||||||||||||||||| | |||  ||||||||| ||| |||||||||||| ||||    
T  21633142 aactaaccatagtttacatatcaactaactatggtttactcattatactctaataatccc 21633201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 4895520 - 4895467
Alignment:
Q  216 ccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 270  Q
    ||||||||||||||||||| ||| ||||||| |||||| ||| ||||||||||||    
T  4895520 ccctcaaactcaaaatggggaaaatcaccaa-tttgagcttggaatacaatgaaa 4895467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 146 - 270
Target Start/End: Original strand, 9138 - 9261
Alignment:
Q  146 cctaaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactctaatagtccccctcaaactcaaaatgggaaaattcacca 245  Q
    |||||||||  |||||||||||||| |||||| | |||  |||||||||||||||||||||||||||||| |||||||||||| || |  ||||||||||    
T  9138 cctaaccaaacaactaaccatagttcacatataaactaactatggtttattcactatactctaatagtcctcctcaaactcaagattgagaaattcacca 9237  T
Q  246 attttgagtttgaaatacaatgaaa 270  Q
    | |||||||||||||||||||||||    
T  9238 a-tttgagtttgaaatacaatgaaa 9261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 35673477 - 35673571
Alignment:
Q  166 tagtttacatattatctagttatggtttattcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaat 261  Q
    |||||||||||||| |||  ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  35673477 tagtttacatattaactaactatggtttattcactatactctattagtccccctcaaactcaaaatggggaaatttaccaa-tttgagtttgaaat 35673571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 1175015 - 1174945
Alignment:
Q  195 ttcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaa 265  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1175015 ttcactatactctaatagtcctcctcaaactcaaaatggaaaaattcaccaattttgagtttgaaatacaa 1174945  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 10885517 - 10885464
Alignment:
Q  214 ccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatg 267  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  10885517 ccccctcaaactcaaagtggggaaattcaccaattttgagtttgaaataaaatg 10885464  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 28220481 - 28220576
Alignment:
Q  198 actatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaattaccatacaaatgaattaacaaac 295  Q
    |||||| | ||||||||| | ||||||| ||||||||||| || |||||||  ||  ||| |||||||||||| ||| |||||||||||| |||||||    
T  28220481 actatattgtaatagtcctcttcaaactaaaaatgggaaattt-accaattc-gaaattggaatacaatgaaaatacaatacaaatgaatgaacaaac 28220576  T

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Target: scaffold0251 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 6221 - 6149
Alignment:
Q  201 atactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaattac 274  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  6221 atactctaatagtccccctcaaactcaaaatggggaaaatcaccaa-tttgagtttgaaatacaacgaaattac 6149  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 17308597 - 17308534
Alignment:
Q  196 tcactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaa 260  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  17308597 tcactatattctaatagtccccctcaaactcaaaatggggaaattcaccaa-tttgagtttgaaa 17308534  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 45035059 - 45034996
Alignment:
Q  197 cactatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaat 261  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||    
T  45035059 cactatactctaatagtccccctcaaactcaaaatagggaaattcaccaa-tttgagtttgaaat 45034996  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 25306724 - 25306654
Alignment:
Q  198 actatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 270  Q
    |||||| ||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  25306724 actatattctaatagttccc-tcaaactcaaagtgggaaaattcaccaa-tttgagtttgaaatacaatgaaa 25306654  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 14007697 - 14007614
Alignment:
Q  128 ctaactaactctta-ctaccctaaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactctaatagt 213  Q
    |||||||||||||| ||||| |||||||  ||||||||||||||||||||||| |||  ||||||||||||||  ||||||||||||    
T  14007697 ctaactaactcttaactacc-taaccaaccaactaaccatagtttacatattaactaactatggtttattcac--tactctaatagt 14007614  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 20957492 - 20957427
Alignment:
Q  146 cctaaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactctaata 211  Q
    |||||| || |||||||||||| ||||||||| | |||  ||||||||||||||||||||||||||    
T  20957492 cctaactaactaactaaccataatttacatataacctaactatggtttattcactatactctaata 20957427  T

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Target: scaffold0160 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 28462 - 28399
Alignment:
Q  148 taaccaagtaactaaccatagtttacatattatctagttatggtttattcactatactctaata 211  Q
    |||||||  ||||||||||||||||| ||| | |||  ||||||||||||| ||||||||||||    
T  28462 taaccaaccaactaaccatagtttacctatcaactaactatggtttattcaatatactctaata 28399  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 15018 - 14975
Alignment:
Q  225 tcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaa 269  Q
    |||||||||| ||||||||||| |||||||||| |||||||||||    
T  15018 tcaaaatggggaaattcaccaa-tttgagtttggaatacaatgaa 14975  T

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