View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_high_28 (Length: 236)
Name: NF20135_high_28
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 41621696 - 41621481
Alignment:
| Q |
5 |
atatcaaacaacgatgagaagtggtagagtgcttccctaaaccgagtcaggaaaaacggtgcaatataacttccattgacaactccatggaagaagattt |
104 |
Q |
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| T |
41621696 |
atatcaaacaacgatgagaagtggtagagtgcttccttaaaccgagtcaggaaaaacggtgcgttataacttccattggcaactccatggaagaagactt |
41621597 |
T |
|
| Q |
105 |
tcggattaatcttcctgatgaggttcaacaatgcttctcttggacaattcactgctacagtttcatcaggcaggttcttcattctgtataaacagctaac |
204 |
Q |
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| T |
41621596 |
ttggattaatcttcctgatcagcttcaacacagcttctcttggacaattcaatgccacagtttcatcaggaaggttcttcagtctgtacaaacagctaac |
41621497 |
T |
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| Q |
205 |
aagagttacttcattc |
220 |
Q |
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|||||||| ||||||| |
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| T |
41621496 |
aagagttatttcattc |
41621481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 41625042 - 41624827
Alignment:
| Q |
5 |
atatcaaacaacgatgagaagtggtagagtgcttccctaaaccgagtcaggaaaaacggtgcaatataacttccattgacaactccatggaagaagattt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || |
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| T |
41625042 |
atatcaaacaacgatgagaagtggtagagtgcttccttaaaccgagtcaggaaaaacggtgcgttataacttccattggcaactccatggaagaagactt |
41624943 |
T |
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| Q |
105 |
tcggattaatcttcctgatgaggttcaacaatgcttctcttggacaattcactgctacagtttcatcaggcaggttcttcattctgtataaacagctaac |
204 |
Q |
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| T |
41624942 |
ttggattaatcttcctgatcagcttcaacacagcttctcttggacaattcaatgccacagtttcatcaggaaggttcttcagtctgtacaaacagctaac |
41624843 |
T |
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| Q |
205 |
aagagttacttcattc |
220 |
Q |
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|||||||| ||||||| |
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| T |
41624842 |
aagagttatttcattc |
41624827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 41628003 - 41627788
Alignment:
| Q |
5 |
atatcaaacaacgatgagaagtggtagagtgcttccctaaaccgagtcaggaaaaacggtgcaatataacttccattgacaactccatggaagaagattt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| || |
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| T |
41628003 |
atatcaaacaacgatgagaagtggtagagtgcttccttaaaccgagtcgggaaaaacggtgcgctataacttccattggcaactccatggaagaagactt |
41627904 |
T |
|
| Q |
105 |
tcggattaatcttcctgatgaggttcaacaatgcttctcttggacaattcactgctacagtttcatcaggcaggttcttcattctgtataaacagctaac |
204 |
Q |
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| ||||||||||||||||| || ||||||| ||||||||||||||||||| ||| |||||||||||||| |||||||||| |||||| ||||||||||| |
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| T |
41627903 |
ttggattaatcttcctgatcagcttcaacacagcttctcttggacaattcaatgccacagtttcatcaggaaggttcttcagtctgtacaaacagctaac |
41627804 |
T |
|
| Q |
205 |
aagagttacttcattc |
220 |
Q |
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|||||||| ||||||| |
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| T |
41627803 |
aagagttatttcattc |
41627788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 23930871 - 23930753
Alignment:
| Q |
5 |
atatcaaacaacgatgagaagtggtagagtgcttccctaaaccgagtcaggaaaaacggtgcaatataacttccattgacaactccatggaagaagattt |
104 |
Q |
| |
|
||||||||||| |||||||| ||| | ||||||||||| |||| ||| || ||||| ||||| ||||| ||||||| || || ||||| | ||| || | |
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| T |
23930871 |
atatcaaacaatgatgagaaatggaatagtgcttccctgaacctagtaagaaaaaagggtgcgttataagttccattcactacaccatgtatgaaaatgt |
23930772 |
T |
|
| Q |
105 |
tcggattaatcttcctgat |
123 |
Q |
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| ||||||||| ||||||| |
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| T |
23930771 |
ttggattaatcctcctgat |
23930753 |
T |
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