View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_high_4 (Length: 417)
Name: NF20135_high_4
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 22 - 409
Target Start/End: Complemental strand, 25063041 - 25062657
Alignment:
| Q |
22 |
gcgtttctctcaaatttctcctcctttgcttctcaacctccatacttctcaaaccaccgccatttccggtaacaccgccaccgtcgcaatcggcattgtt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||| |
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| T |
25063041 |
gcgtttctctcaaatttctcctcctttgcttctcaacctccatacttctcaaaccaccgccatttccggtaacaacaccgccttcgcaatcggcattgtt |
25062942 |
T |
|
| Q |
122 |
tctcttcaacttctgcttcctcttccatttcctcaatctcttgctgaaaaccgaagcagcatcccagaaactcgttctagaagaatctctccctgcattc |
221 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25062941 |
tctcttcaacttttgtttcctcttccatttcctcaatctcttgctgaaaaccgaagcagcatcccagaaactcgttctagaagaatctctccctgcattc |
25062842 |
T |
|
| Q |
222 |
ttcccactacgaatttcaagatctataaactctttcatcgtcttcgtctcttcttcatcattttcatcttcaaccaaaaccctaccaatgtcacaaccac |
321 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25062841 |
ttcccactacgaatttcaagatctataaactccttcatcgtcttcgtctcttcttcatcattttcatcttcaaccaaaaccctaccaatgtcacaaccac |
25062742 |
T |
|
| Q |
322 |
cgtcgaaatcgataatctcaaaacgtgattttcgagattcgttttcgagacaccgattcaaaccagggttcttctgctttttcttctc |
409 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
25062741 |
cgtcgaaatctataatctcaaaacgtgattttcgagattcgttttcgagacaccgattaaaaccagg---tttctgctttttcttctc |
25062657 |
T |
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