View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_high_8 (Length: 349)
Name: NF20135_high_8
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 37836042 - 37835726
Alignment:
| Q |
14 |
cagagaggctgttgttgtgaaccaagatgttcacaagacttgaaattctccaaacactgaccggaattttgcctctcagtcggttgaaagacaattcaag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37836042 |
cagagaggctgttgttgtgaaccaagatgttcacaagacttgaaattctccaaacactgaccggaattttgcctctcagtcggttgaaagacaattcaag |
37835943 |
T |
|
| Q |
114 |
gtcctctaatttactgcaattaccaagagatgaaggaatagtccctgacaactgattaccatatagatacaacctcaatagatgagtcaagtttccaata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37835942 |
gtcctctaatttactgcaattaccaagagatgaaggaatagtccctgacaactgattaccatatagatacaacctcaatagatgagtcaagtttccaata |
37835843 |
T |
|
| Q |
214 |
ttggtcgggataggaccactaagaaggttactgtgcagatttacttcttccaaggatggaattttaaacaaggaatctggaatttcaccgataagcagat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37835842 |
ttggtcgggataggaccactaagaaggttactgtgcaggtttacttcttccaaggatggaattttaaacaaggaatctggaatttcaccgataagcagat |
37835743 |
T |
|
| Q |
314 |
tggatgagagactcata |
330 |
Q |
| |
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||||||||||||||||| |
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| T |
37835742 |
tggatgagagactcata |
37835726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 37849415 - 37849129
Alignment:
| Q |
16 |
gagaggctgttgttgtgaaccaagatgttcacaagacttgaaattctccaaacactgaccggaattttgcctctcagtcggttgaaagacaattcaaggt |
115 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |
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| T |
37849415 |
gagaggctgttgttgtgaaccaatatgtgcacaagacttgaaattctccaaacactgaccggaatttcgcctctcaaacggttgaaagaaaattcaaggt |
37849316 |
T |
|
| Q |
116 |
cctctaatttactgcaattaccaagagatgaaggaatagtccctgacaactgattaccatatagatacaacctcaatagatgagtcaagtttccaatatt |
215 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37849315 |
cctctaatttgctgcaattaccaagagatgtaggaatagtccctgacaactgattaccatatagatacaacctcaatagacgagtcaagtttccaatatt |
37849216 |
T |
|
| Q |
216 |
ggtcgggataggaccactaagaaggttactgtgcagatttacttcttccaaggatggaattttaaacaaggaatctggaatttcacc |
302 |
Q |
| |
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|| ||||||||||||||||| |||||||||||||| | |||||||| | |||| |||||| |||||| ||||||||||||||||| |
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| T |
37849215 |
tgttgggataggaccactaagtaggttactgtgcaggctaacttcttcaagggattgaatttgaaacaaagaatctggaatttcacc |
37849129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 37841661 - 37841358
Alignment:
| Q |
14 |
cagagaggctgttgttgtgaaccaagatgttcacaagacttgaaattctccaaacactgaccggaattttgcctctcagtcggttgaaagacaattcaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||| ||||||| ||||||||||| || | ||| |
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| T |
37841661 |
cagagaggctgttgttgtgaaccaagatgtgcaaaagactttgtattctccaaacaaagaccggaatttcacctctcaaacggttgaaagataagttaag |
37841562 |
T |
|
| Q |
114 |
gtcctctaatttactgcaattaccaagagatgaaggaatagtccctgacaactgattaccatatagatacaacctcaatagatgagtcaagtttccaata |
213 |
Q |
| |
|
|||||||| |||||| |||||||||| || |||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
37841561 |
gtcctctagtttactacaattaccaatagctgaaggaatagtccctgaaaacatattacgatgtagatacaacctcaatagatgagtcaagtttccaata |
37841462 |
T |
|
| Q |
214 |
ttggtcgggataggaccactaagaaggttactgtgcagatttacttcttccaaggatggaattttaaacaaggaatctggaatttcaccgataagcagat |
313 |
Q |
| |
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|| || |||||||| ||||| |||||||||||||| || | |||||||| | ||| |||||| |||||| ||||||||||||||||| | ||||||| |
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| T |
37841461 |
tttgttgggatagggccactgagaaggttactgtgtaggctcacttcttcgagggaatgaatttcaaacaatgaatctggaatttcaccagtcagcagat |
37841362 |
T |
|
| Q |
314 |
tgga |
317 |
Q |
| |
|
|||| |
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|
| T |
37841361 |
tgga |
37841358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 37830328 - 37830054
Alignment:
| Q |
24 |
gttgttgtgaaccaagatgttcacaagacttgaaattctccaaacactgaccggaattttgcctctcagtcggttgaaagacaattcaaggtcctctaat |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||||||| |||||||||||||| |||||||| || | | |
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| T |
37830328 |
gttgttgtgaaccaagatgtgcacaagactttgaattctccaaatactgaccggaatttcacctctcaaacggttgaaagacaaatcaaggtcttcaagt |
37830229 |
T |
|
| Q |
124 |
ttactgcaattaccaagagatgaaggaatagtccctgacaactgattaccatatagatacaacctcaatagatgagtcaagtttccaatattggtcggga |
223 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| ||| ||||| || |||||||||||| ||||||| ||||| ||||||||||||||| |||| |
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| T |
37830228 |
ttactgcaattgccaagagatgaaggaatggtccctgaaaacatattactatgtagatacaaccttaatagattagtcatgtttccaatattggttggga |
37830129 |
T |
|
| Q |
224 |
taggaccactaagaaggttactgtgcagatttacttcttccaaggatggaattttaaacaaggaatctggaattt |
298 |
Q |
| |
|
|| || |||||||||||| ||||||| | |||||||| | |||| |||||| ||| || ||||||||||||| |
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|
| T |
37830128 |
tattgccgctaagaaggttattgtgcaggctcacttcttcaagggattgaatttcaaataaagaatctggaattt |
37830054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 36864806 - 36864515
Alignment:
| Q |
14 |
cagagaggctgttgttgtgaaccaagatgttcacaagacttgaaattctccaaacactgaccggaattttgcctctcagtcggttgaaagacaattcaag |
113 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||| |||||||||||||||| |||| || ||||||| ||||||| |||||||||||||||||||| |
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| T |
36864806 |
cagagaggctgttgtggtgaaccaagatatgcacaaggcttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaag |
36864707 |
T |
|
| Q |
114 |
gtcctctaatttactgcaattaccaagagatgaaggaatagtccctgacaactgattaccatatag---atacaacctcaatagatgagtcaagtttcca |
210 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
36864706 |
gtcctctagtttactgcagttaccaagagatgaaggaatagtccctgaaaacatattaccatatagataatacagtctcaatagatgagtcaagtttcca |
36864607 |
T |
|
| Q |
211 |
atattggtcgggataggaccactaagaaggttactgtgcagatttacttcttccaaggatggaattttaaacaaggaatctggaatttcacc |
302 |
Q |
| |
|
|||||||| || ||| ||||||||||||||| ||||||| | |||||||| | ||| ||||||| ||| || ||||||||||||||||| |
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|
| T |
36864606 |
atattggttggaatatttccactaagaaggttattgtgcaggctcacttcttcaagggaaggaatttcaaataaagaatctggaatttcacc |
36864515 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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