View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_11 (Length: 366)
Name: NF20135_low_11
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 15291444 - 15291106
Alignment:
| Q |
19 |
aatgattcaattcaacaaaatatgttagtggtttagttcatggcatagcattctctcaatgaaatattacaatgcgggaattcaataaatctat----ta |
114 |
Q |
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| T |
15291444 |
aatgattcaattcaacaaaatatgttagtggtttagttcatggcatagcattctctcaatgaaatattacaatgcgggaattcaataaatctatatatta |
15291345 |
T |
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| Q |
115 |
tggtatttagaagttagagttgatccggtaacctacttggagcattcaccatcgcaagaaccggtgatgcctccaacagctcccaccaccgtcgctcagc |
214 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15291344 |
tggtatttagaagttagagttaatccggtaacctacttggagcattcaccatcgcaagaaccggtgatgcctccaacagctcc-accaccgtcgctcagc |
15291246 |
T |
|
| Q |
215 |
cttgtattgttgtctttgacgaacaaaaattctctcggccatatccgaaaagcctcattcagtgaattacctcctttggtgtcaacaggtcgaacctgtc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15291245 |
cttgtattgttgtctttgacgaacaaaaattctctcggccatatccgaaaagcctcattcagtgaattacctcctttggtgtcaacaggtcgaacctgtc |
15291146 |
T |
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| Q |
315 |
atcaaagcgcccaagctgcatcacttcctcatcaatcctt |
354 |
Q |
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| T |
15291145 |
atcaaagcgcccaagctgcatcacttcctcatcaatcctt |
15291106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 15471813 - 15471475
Alignment:
| Q |
19 |
aatgattcaattcaacaaaatatgttagtggtttagttcatggcatagcattctctcaatgaaatattacaatgcgggaattcaataaatctat----ta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15471813 |
aatgattcaattcaacaaaatatgttagtggtttagttcatggcatagcattctctcaatgaaatattacaatgcgggaattcaataaatctatatatta |
15471714 |
T |
|
| Q |
115 |
tggtatttagaagttagagttgatccggtaacctacttggagcattcaccatcgcaagaaccggtgatgcctccaacagctcccaccaccgtcgctcagc |
214 |
Q |
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| T |
15471713 |
tggtatttagaagttagagttaatccggtaacctacttggagcattcaccatcgcaagaaccggtgatgcctccaacagctcc-accaccgtcgctcagc |
15471615 |
T |
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| Q |
215 |
cttgtattgttgtctttgacgaacaaaaattctctcggccatatccgaaaagcctcattcagtgaattacctcctttggtgtcaacaggtcgaacctgtc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15471614 |
cttgtattgttgtctttgacgaacaaaaattctctcggccatatccgaaaagcctcattcagtgaattacctcctttggtgtcaacaggtcgaacctgtc |
15471515 |
T |
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| Q |
315 |
atcaaagcgcccaagctgcatcacttcctcatcaatcctt |
354 |
Q |
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| T |
15471514 |
atcaaagcgcccaagctgcatcacttcctcatcaatcctt |
15471475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 54356133 - 54356087
Alignment:
| Q |
285 |
ctcctttggtgtcaacaggtcgaacctgtcatcaaagcgcccaagct |
331 |
Q |
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||||| |||||||||||||| |||||||| |||||||||| |||||| |
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| T |
54356133 |
ctcctatggtgtcaacaggttgaacctgttatcaaagcgcgcaagct |
54356087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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