View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20135_low_15 (Length: 339)

Name: NF20135_low_15
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20135_low_15
NF20135_low_15
[»] chr2 (1 HSPs)
chr2 (11-322)||(6236341-6236652)
[»] chr4 (5 HSPs)
chr4 (11-322)||(5281421-5281732)
chr4 (240-313)||(5279382-5279455)
chr4 (240-316)||(5287366-5287442)
chr4 (101-197)||(5287510-5287606)
chr4 (154-214)||(5279506-5279566)
[»] chr5 (4 HSPs)
chr5 (112-322)||(20352920-20353130)
chr5 (101-197)||(20358905-20359001)
chr5 (265-316)||(20358759-20358810)
chr5 (11-116)||(20352523-20352628)
[»] chr3 (1 HSPs)
chr3 (16-61)||(30746143-30746188)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 6236652 - 6236341
Alignment:
Q  11 cagagattaatcactcgagataattgaaattcatctaaagaattgatctctcataacatatatttttccatacacaccgatcaaagattgaaccctaaac 110  Q
    ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  6236652 cagagattaattactcgaaataattgaaattcatctaaaggattgatctctcataacatatatttttccatacacaccggtcaaagatcgaaccctaaac 6236553  T
Q  111 aaattggttaaatgatcgaaacatataccacttgtgtgacatcgtgttggtctaaacttatcttaatttcatttagtccaaaacattaacattacaaaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6236552 aaattggttaaatgatcgaaacatataccacttgtgtgacatcgtgttggtctaaacttatcttaatttcatttagtccaaaacattaacattacaaaat 6236453  T
Q  211 tacctttgtgagaacaggtaaagacaagtttaaaaatggttttgactttagtatggagatcaagtacacatgtagttgttaaagaatggttcattagtta 310  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6236452 taccattgtgagaacaggtaaagacaagtttaaaaatggttttgactttagtatggagatcaagtacacatgtagttgttaaagaatggttcattattta 6236353  T
Q  311 ataaaaaactaa 322  Q
    ||||||||||||    
T  6236352 ataaaaaactaa 6236341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 5281421 - 5281732
Alignment:
Q  11 cagagattaatcactcgagataattgaaattcatctaaagaattgatctctcataacatatatttttccatacacaccgatcaaagattgaaccctaaac 110  Q
    |||||||||||||  | ||||||||||||||||| |||   ||||| ||||| |||| |||||||| |||||  || ||  | ||||| |||||||||||    
T  5281421 cagagattaatcatccaagataattgaaattcatttaagagattgacctctcttaacgtatattttgccatatgcatcggccgaagatcgaaccctaaac 5281520  T
Q  111 aaattggttaaatgatcgaaacatataccacttgtgtgacatcgtgttggtctaaacttatcttaatttcatttagtccaaaacattaacattacaaaat 210  Q
    |||||||||||||| |||||| ||||||||||||||| | ||  |||||||||||||||| ||| ||||||||||| |||||| | |||||||| |||||    
T  5281521 aaattggttaaatgttcgaaatatataccacttgtgtcatattatgttggtctaaacttaacttcatttcatttagcccaaaatagtaacattaaaaaat 5281620  T
Q  211 tacctttgtgagaacaggtaaagacaagtttaaaaatggttttgactttagtatggagatcaagtacacatgtagttgttaaagaatggttcattagtta 310  Q
    |||| ||  |||||||||||| |||||||||||||||||| |||||||| || ||||||||||| | ||||||||||||||||||||||||||||| |||    
T  5281621 taccattaagagaacaggtaaggacaagtttaaaaatggtcttgactttggtttggagatcaagcaaacatgtagttgttaaagaatggttcattattta 5281720  T
Q  311 ataaaaaactaa 322  Q
    ||||||||||||    
T  5281721 ataaaaaactaa 5281732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 5279455 - 5279382
Alignment:
Q  240 ttaaaaatggttttgactttagtatggagatcaagtacacatgtagttgttaaagaatggttcattagttaata 313  Q
    ||||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  5279455 ttaaaaatggtcttgactttggtttggagatcaagtatacatgtagttgttaaagaatggttcattatttaata 5279382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 5287442 - 5287366
Alignment:
Q  240 ttaaaaatggttttgactttagtatggagatcaagtacacatgtagttgttaaagaatggttcattagttaataaaa 316  Q
    ||||| ||||| |||||||  || ||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  5287442 ttaaatatggtcttgacttcggtttggagatcaagtatacatgtagttgttaaagaatggttcattaattaataaaa 5287366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 5287606 - 5287510
Alignment:
Q  101 aaccctaaacaaattggttaaatgatcgaaacatataccacttgtgtgacatcgtgttggtctaaacttatcttaatttcatttagtccaaaacatt 197  Q
    |||||| || ||| ||||||||| | | || |||||||||||||||  |||  ||||||||||||||||||||||||||||||  | ||||||||||    
T  5287606 aaccctgaataaaatggttaaataacccaatcatataccacttgtgccacactgtgttggtctaaacttatcttaatttcattcggcccaaaacatt 5287510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 5279566 - 5279506
Alignment:
Q  154 gtgttggtctaaacttatcttaatttcatttagtccaaaacattaacattacaaaattacc 214  Q
    ||||||||||||||||||||||||||||||| | |||||| |||  ||||| |||||||||    
T  5279566 gtgttggtctaaacttatcttaatttcattttgcccaaaatattttcattataaaattacc 5279506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 112 - 322
Target Start/End: Original strand, 20352920 - 20353130
Alignment:
Q  112 aattggttaaatgatcgaaacatataccacttgtgtgacatcgtgttggtctaaacttatcttaatttcatttagtccaaaacattaacattacaaaatt 211  Q
    ||||| ||||||| ||||| ||||||||||||| || | || ||||||||||||||||| ||||||||||||||| |||||| | |||||||| ||||||    
T  20352920 aattgattaaatgttcgaagcatataccacttgagtcatattgtgttggtctaaacttaacttaatttcatttagcccaaaatagtaacattaaaaaatt 20353019  T
Q  212 acctttgtgagaacaggtaaagacaagtttaaaaatggttttgactttagtatggagatcaagtacacatgtagttgttaaagaatggttcattagttaa 311  Q
    ||| ||  |||||||||||| |||||||||||||||||| |||||||| || ||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  20353020 accattaagagaacaggtaaggacaagtttaaaaatggtcttgactttggtttggagatcaagcaaacatgtagttgttaaagaatggttcattatttaa 20353119  T
Q  312 taaaaaactaa 322  Q
    |||||||||||    
T  20353120 taaaaaactaa 20353130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 20359001 - 20358905
Alignment:
Q  101 aaccctaaacaaattggttaaatgatcgaaacatataccacttgtgtgacatcgtgttggtctaaacttatcttaatttcatttagtccaaaacatt 197  Q
    |||||| || ||| ||||||||| | | || |||||||||||||||  |||  |||||||||||||||||||||||||||||| || ||||||||||    
T  20359001 aaccctgaataaaatggttaaataacccaatcatataccacttgtgccacactgtgttggtctaaacttatcttaatttcattcagcccaaaacatt 20358905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 20358810 - 20358759
Alignment:
Q  265 ggagatcaagtacacatgtagttgttaaagaatggttcattagttaataaaa 316  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  20358810 ggagatcaagtatacatgtagttgttaaagaatggttcattaattaataaaa 20358759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 20352523 - 20352628
Alignment:
Q  11 cagagattaatcactcgagataattgaaattcatctaaagaattgatctctcataacatatatttttccatacacaccgatcaaagattgaaccctaaac 110  Q
    |||||||||||||| | ||||||||||||||||| |||   ||||| ||||| ||||||||||||| |||||  |||||  | ||||| |||||||| ||    
T  20352523 cagagattaatcacccaagataattgaaattcatttaagagattgacctctcttaacatatattttgccatatgcaccggccgaagatcgaaccctacac 20352622  T
Q  111 aaattg 116  Q
    ||||||    
T  20352623 aaattg 20352628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 30746188 - 30746143
Alignment:
Q  16 attaatcactcgagataattgaaattcatctaaagaattgatctct 61  Q
    ||||||| || |||||||||||||||||| |||| |||||||||||    
T  30746188 attaatctcttgagataattgaaattcatttaaaaaattgatctct 30746143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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