View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20135_low_16 (Length: 339)

Name: NF20135_low_16
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20135_low_16
NF20135_low_16
[»] chr8 (7 HSPs)
chr8 (1-92)||(1920679-1920768)
chr8 (123-171)||(7987741-7987789)
chr8 (122-169)||(10656415-10656462)
chr8 (205-242)||(1920799-1920836)
chr8 (122-171)||(17898079-17898128)
chr8 (115-192)||(19778058-19778134)
chr8 (115-184)||(30623286-30623354)
[»] chr4 (8 HSPs)
chr4 (122-184)||(7371548-7371609)
chr4 (115-185)||(14542759-14542828)
chr4 (116-169)||(11269688-11269741)
chr4 (115-166)||(29910454-29910505)
chr4 (122-168)||(41536922-41536968)
chr4 (119-184)||(19908689-19908753)
chr4 (117-166)||(55924804-55924853)
chr4 (116-184)||(49308814-49308881)
[»] chr5 (4 HSPs)
chr5 (120-171)||(19783647-19783698)
chr5 (122-184)||(39914901-39914961)
chr5 (122-171)||(8545001-8545050)
chr5 (116-168)||(41266380-41266432)
[»] chr2 (4 HSPs)
chr2 (115-169)||(16204831-16204885)
chr2 (126-191)||(43356535-43356599)
chr2 (115-167)||(7640651-7640703)
chr2 (122-181)||(24016093-24016152)
[»] chr1 (9 HSPs)
chr1 (122-171)||(563201-563250)
chr1 (124-184)||(41973257-41973316)
chr1 (122-171)||(4968627-4968676)
chr1 (114-171)||(9639829-9639886)
chr1 (114-171)||(19620568-19620625)
chr1 (116-169)||(34032366-34032419)
chr1 (122-171)||(47071970-47072019)
chr1 (114-170)||(5907791-5907847)
chr1 (121-169)||(34848475-34848523)
[»] chr3 (1 HSPs)
chr3 (116-184)||(23147978-23148045)
[»] chr7 (2 HSPs)
chr7 (121-192)||(6384850-6384920)
chr7 (122-168)||(47960896-47960942)
[»] scaffold0533 (1 HSPs)
scaffold0533 (122-182)||(8852-8912)
[»] chr6 (1 HSPs)
chr6 (116-168)||(884084-884136)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1920679 - 1920768
Alignment:
Q  1 ttaattaatttgggagaaaactaattttaagtattatacatgtgggttagacctgaaaaatcatatgtgaaaattctcataacaataatact 92  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||| ||||||||||||    
T  1920679 ttaatttatttgggagaaaactaattttaagtattatacatgtgggttagacctgaaaaatc--atgtgaaaattgtcacaacaataatact 1920768  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 7987789 - 7987741
Alignment:
Q  123 tgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccg 171  Q
    ||||||||||| |||||  |||||||| |||||||||||||||||||||    
T  7987789 tgagcttaactcaattgctaaggacaatacataatatatgcaaggtccg 7987741  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 10656415 - 10656462
Alignment:
Q  122 gtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtc 169  Q
    ||||||| |||| |||||||||||| || |||||||||||||||||||    
T  10656415 gtgagctaaactcaattgacaaggataatacataatatatgcaaggtc 10656462  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 1920799 - 1920836
Alignment:
Q  205 tgttacgatggttgcaaaaagttatttcatcccattaa 242  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  1920799 tgttacgattgttgtaaaaagttatttcatcccattaa 1920836  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 17898079 - 17898128
Alignment:
Q  122 gtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccg 171  Q
    |||||||||||| | |||  | ||||||||||||||||||||||||||||    
T  17898079 gtgagcttaactcagttggtatggacaaaacataatatatgcaaggtccg 17898128  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 19778058 - 19778134
Alignment:
Q  115 tgtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccgcgggttcgaaccctatacacc 192  Q
    |||||| ||||||||| || | |||  ||||||||  |||||||||||||||||||| ||||||||| |||| |||||    
T  19778058 tgtccccgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtccg-gggttcgaatcctagacacc 19778134  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 30623286 - 30623354
Alignment:
Q  115 tgtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccgcgggttcgaaccc 184  Q
    |||||||||||||||| || | |||  ||||||||  |||||||||||||||||| | ||||||||||||    
T  30623286 tgtccctgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtctg-gggttcgaaccc 30623354  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 7371609 - 7371548
Alignment:
Q  122 gtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccgcgggttcgaaccc 184  Q
    |||||||||||| | |||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  7371609 gtgagcttaactcagttgataaggacaatacataatatatgcaaggtccg-gggttcgaaccc 7371548  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 14542828 - 14542759
Alignment:
Q  115 tgtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccgcgggttcgaaccct 185  Q
    ||||| |||||||||| |||| ||| |||||||||  |||||||||||||||||| | |||||||||||||    
T  14542828 tgtccatgtgagcttagcttagttggcaaggacaatgcataatatatgcaaggtctg-gggttcgaaccct 14542759  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 11269688 - 11269741
Alignment:
Q  116 gtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtc 169  Q
    ||||| |||||||||||||| |||  |||||||| |||||||||||||||||||    
T  11269688 gtccccgtgagcttaacttagttggtaaggacaatacataatatatgcaaggtc 11269741  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 29910454 - 29910505
Alignment:
Q  115 tgtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaag 166  Q
    |||||| |||||||||||| |||||| ||||||||  |||||||||||||||    
T  29910454 tgtccccgtgagcttaactcaattgataaggacaatgcataatatatgcaag 29910505  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 41536922 - 41536968
Alignment:
Q  122 gtgagcttaacttaattgacaaggacaaaacataatatatgcaaggt 168  Q
    ||||| |||||| |||||| |||||||| ||||||||||||||||||    
T  41536922 gtgagtttaactcaattgataaggacaatacataatatatgcaaggt 41536968  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 19908689 - 19908753
Alignment:
Q  119 cctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccgcgggttcgaaccc 184  Q
    ||||||||||||||| | |||  ||||||||  ||||||||||||||||||||  |||||||||||    
T  19908689 cctgtgagcttaactcagttggtaaggacaatgcataatatatgcaaggtccg-aggttcgaaccc 19908753  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 55924853 - 55924804
Alignment:
Q  117 tccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaag 166  Q
    |||||||||||||| || |||||  |||||||| ||||||||||||||||    
T  55924853 tccctgtgagcttagctcaattggtaaggacaatacataatatatgcaag 55924804  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 49308814 - 49308881
Alignment:
Q  116 gtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccgcgggttcgaaccc 184  Q
    ||||| || |||||| || | |||||||||||||  |||||||||||||||||| | ||||||||||||    
T  49308814 gtccccgtaagcttagctcagttgacaaggacaatgcataatatatgcaaggtctg-gggttcgaaccc 49308881  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 19783698 - 19783647
Alignment:
Q  120 ctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccg 171  Q
    |||||||||||||||| |||| || ||||| |||||||||||||||||||||    
T  19783698 ctgtgagcttaacttagttgataaagacaatacataatatatgcaaggtccg 19783647  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 39914901 - 39914961
Alignment:
Q  122 gtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccgcgggttcgaaccc 184  Q
    |||||||||||| |||||  ||||||||  ||||||||||||||||||  |||||||||||||    
T  39914901 gtgagcttaactcaattggtaaggacaatgcataatatatgcaaggtc--cgggttcgaaccc 39914961  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 8545050 - 8545001
Alignment:
Q  122 gtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccg 171  Q
    |||||||||||| | |||| ||||||||  ||||||||||||||||||||    
T  8545050 gtgagcttaactcagttgataaggacaatgcataatatatgcaaggtccg 8545001  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 41266380 - 41266432
Alignment:
Q  116 gtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggt 168  Q
    |||| |||||| ||| || |||||| ||||||||||||||||||||| |||||    
T  41266380 gtccttgtgagtttagctcaattgataaggacaaaacataatatatgtaaggt 41266432  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 16204885 - 16204831
Alignment:
Q  115 tgtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtc 169  Q
    ||||||||||||||||||| | |||| ||||||||  ||||||||||||||||||    
T  16204885 tgtccctgtgagcttaactcagttgataaggacaatgcataatatatgcaaggtc 16204831  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 43356599 - 43356535
Alignment:
Q  126 gcttaacttaattgacaaggacaaaacataatatatgcaaggtccgcgggttcgaaccctatacac 191  Q
    |||||||||| |||||||| ||||  ||||||||||||||||||||  ||||||||||||| ||||    
T  43356599 gcttaacttagttgacaagaacaatgcataatatatgcaaggtccg-aggttcgaaccctaaacac 43356535  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 7640651 - 7640703
Alignment:
Q  115 tgtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaagg 167  Q
    |||||| |||||||||||| |||||  |||||||| |||||||||||| ||||    
T  7640651 tgtccccgtgagcttaactcaattggtaaggacaatacataatatatgtaagg 7640703  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 24016152 - 24016093
Alignment:
Q  122 gtgagcttaacttaattgacaaggacaaaacataatatatgc-aaggtccgcgggttcgaa 181  Q
    ||||| |||||| ||||||||||||||| | ||||||||||| |||||||| |||||||||    
T  24016152 gtgagattaactcaattgacaaggacaatatataatatatgcaaaggtccg-gggttcgaa 24016093  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 563201 - 563250
Alignment:
Q  122 gtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccg 171  Q
    ||||||||| || | |||| ||||||||||||||||||||||||||||||    
T  563201 gtgagcttagctcagttgataaggacaaaacataatatatgcaaggtccg 563250  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 41973257 - 41973316
Alignment:
Q  124 gagcttaacttaattgacaaggacaaaacataatatatgcaaggtccgcgggttcgaaccc 184  Q
    ||||||||||||||||  | ||||||  |||||||||||||||||||| ||||||||||||    
T  41973257 gagcttaacttaattggtagggacaatgcataatatatgcaaggtccg-gggttcgaaccc 41973316  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 4968676 - 4968627
Alignment:
Q  122 gtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccg 171  Q
    |||||| ||||||||||| || ||||||  ||||||||||||||||||||    
T  4968676 gtgagcctaacttaattggcagggacaatgcataatatatgcaaggtccg 4968627  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 9639886 - 9639829
Alignment:
Q  114 atgtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccg 171  Q
    ||||||| |||||||||||| | |||  ||||||||  ||||||||||||||||||||    
T  9639886 atgtccccgtgagcttaactcacttggtaaggacaatgcataatatatgcaaggtccg 9639829  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 19620568 - 19620625
Alignment:
Q  114 atgtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccg 171  Q
    ||||||| ||||||||| || | |||  |||||||| |||||||||||||||||||||    
T  19620568 atgtccccgtgagcttagctcagttggtaaggacaatacataatatatgcaaggtccg 19620625  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 34032419 - 34032366
Alignment:
Q  116 gtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtc 169  Q
    |||||||||| ||||||| | |||  ||||||||| ||||||||||||||||||    
T  34032419 gtccctgtgaacttaactcagttggtaaggacaaaccataatatatgcaaggtc 34032366  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 47072019 - 47071970
Alignment:
Q  122 gtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccg 171  Q
    |||||||||||| |||||  ||| |||| |||||||||||||||||||||    
T  47072019 gtgagcttaactcaattggtaagaacaatacataatatatgcaaggtccg 47071970  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 5907791 - 5907847
Alignment:
Q  114 atgtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtcc 170  Q
    ||||||| ||||||||| || | ||| |||||||||  |||||||||||||||||||    
T  5907791 atgtccccgtgagcttagctcagttggcaaggacaatgcataatatatgcaaggtcc 5907847  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 34848475 - 34848523
Alignment:
Q  121 tgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtc 169  Q
    |||||| |||||||| ||||||| |||||  ||||||||||||||||||    
T  34848475 tgtgagtttaacttagttgacaaagacaattcataatatatgcaaggtc 34848523  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 23148045 - 23147978
Alignment:
Q  116 gtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccgcgggttcgaaccc 184  Q
    ||||||||||||||| || | |||  |||||||| ||||||||||||| ||||||| ||||||||||||    
T  23148045 gtccctgtgagcttagctcagttggtaaggacaatacataatatatgcgaggtccg-gggttcgaaccc 23147978  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 6384850 - 6384920
Alignment:
Q  121 tgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccgcgggttcgaaccctatacacc 192  Q
    ||||||||||||| | || | ||||||||  |||||||||||||||||| | |||||||||||||| |||||    
T  6384850 tgtgagcttaactcagttaataaggacaatgcataatatatgcaaggtctg-gggttcgaaccctagacacc 6384920  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 47960896 - 47960942
Alignment:
Q  122 gtgagcttaacttaattgacaaggacaaaacataatatatgcaaggt 168  Q
    |||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  47960896 gtgagcttaactcaattgataaggacaatacataatatatgcgaggt 47960942  T

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Target: scaffold0533 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 8912 - 8852
Alignment:
Q  122 gtgagcttaacttaattgacaaggacaaaacataatatatgcaaggtccgcgggttcgaac 182  Q
    |||||||||||| |||||  ||||||||  ||||||||||||||| |||  ||||||||||    
T  8912 gtgagcttaactcaattggtaaggacaatgcataatatatgcaagatccaggggttcgaac 8852  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 884136 - 884084
Alignment:
Q  116 gtccctgtgagcttaacttaattgacaaggacaaaacataatatatgcaaggt 168  Q
    ||||| ||||||||| ||||||||||||||||||  ||| ||||||| |||||    
T  884136 gtccccgtgagcttagcttaattgacaaggacaatgcatgatatatgtaaggt 884084  T

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