View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_17 (Length: 331)
Name: NF20135_low_17
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 161 - 282
Target Start/End: Complemental strand, 54440518 - 54440397
Alignment:
| Q |
161 |
ctttgctatatggtgcgaatgatataagcacgatctgcacacaataaacggtgggttgtggtttatattttagaaatatataaaagttaaaatcaaaatc |
260 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |
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| T |
54440518 |
ctttgctatatggtgcgaatgatataagcacgacctgtacacgataaacggtgggttgtggtttatatttttgaaataactaaaatttaaaatcaaaatc |
54440419 |
T |
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| Q |
261 |
caatccaatggtttttataaat |
282 |
Q |
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| T |
54440418 |
caatccaatggttattataaat |
54440397 |
T |
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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 22940180 - 22940068
Alignment:
| Q |
158 |
cagctttgctatatggtgcgaatgatataagcacgatctgcacacaataaacggtgggttgtggtttatattttagaaatatataaaagttaaaatcaaa |
257 |
Q |
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||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||| ||||| ||| |||||||| |
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| T |
22940180 |
cagctttgctatacagtgcgaatgatataagcacgacctacacacgataaacggtgggttgtggtttatattttttaaata-ataaatgtttaaatcaaa |
22940082 |
T |
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| Q |
258 |
atccaatccaatgg |
271 |
Q |
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| T |
22940081 |
attcaatccaatgg |
22940068 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 30133376 - 30133300
Alignment:
| Q |
56 |
aattacccacataatttatgtgagggaaaatatgaaatcattttccactaaatctatggacggaagtaataaatttc |
132 |
Q |
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| T |
30133376 |
aattatccacaaaatttaagtgagggaaaatatgaaatcattttctactaaatttagcgatggaagtaataaatttc |
30133300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 30134772 - 30134696
Alignment:
| Q |
56 |
aattacccacataatttatgtgagggaaaatatgaaatcattttccactaaatctatggacggaagtaataaatttc |
132 |
Q |
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| T |
30134772 |
aattatccacaaaatttaagtgagggaaaatatgaaatcattttctactaaatttagcgatggaagtaataaatttc |
30134696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 30144323 - 30144247
Alignment:
| Q |
56 |
aattacccacataatttatgtgagggaaaatatgaaatcattttccactaaatctatggacggaagtaataaatttc |
132 |
Q |
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||||| ||||| |||||| |||||||||||||||||||||||||| ||||||| || || |||||||||||||||| |
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| T |
30144323 |
aattatccacaaaatttaagtgagggaaaatatgaaatcattttctactaaatttagcgatggaagtaataaatttc |
30144247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 30459377 - 30459431
Alignment:
| Q |
54 |
tcaattacccacataatttatgtgagggaaaatatgaaatcattttccactaaat |
108 |
Q |
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||||||||||||| |||||| |||| |||||||||||||||||||||||| |||| |
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| T |
30459377 |
tcaattacccacaaaatttaagtgaaggaaaatatgaaatcattttccacaaaat |
30459431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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