View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_18 (Length: 316)
Name: NF20135_low_18
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 33700122 - 33699821
Alignment:
| Q |
1 |
tgatggatgtttctgaacagtggcattactttccaaccctttggtattaaatatccttaatagttgttgcatcaaagaacattttagaaattaatcatga |
100 |
Q |
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| T |
33700122 |
tgatggatgtttctgaacagtggcattactttccaaccctttggtattaaatatccttaatagttgttgcatcaaagaactttttagaaattaatcatga |
33700023 |
T |
|
| Q |
101 |
agaaaatagtaatagcttttgaaaatgaaatttcctataaatgtacaaaagattagtccgtctaaaattcttaccctggtatactacatcaaccacagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33700022 |
agaaaatagtaatagcttttgaaaatgaaatttcttataaatgtacaaaagattagtccgtctaaaattcttacccttgtatactacatcaaccacagct |
33699923 |
T |
|
| Q |
201 |
tccctaaaagtaaatgatatgatgcttgacatccttaggctttccaatattacctacacaatacaagttatttactagctacttaatgtactcatgaagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33699922 |
tccctaaaagtaaatgatatgatgcttgacatccttaggctttccaatattacctacacaatacaagttatttactagctacttaatgtactcatgaagc |
33699823 |
T |
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| Q |
301 |
tg |
302 |
Q |
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|| |
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| T |
33699822 |
tg |
33699821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 33659387 - 33659295
Alignment:
| Q |
4 |
tggatgtttctgaacagtggcattactttccaaccctttggtattaaatatccttaatagttgttgcatcaaagaacattttagaaattaatcatg |
99 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
33659387 |
tggatgtttctgaacagaggcattactttccaaccttttggtattaaatatccttaata---gttgcatcaaagaacattttagaaaataatcatg |
33659295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 33659223 - 33659130
Alignment:
| Q |
165 |
aaattcttaccctggtatactacatcaaccacagcttccctaaaagtaaatgatatgatgcttgacatccttaggctttccaatattacctaca |
258 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || |||| |||||| || ||||||||||||||||||| |
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| T |
33659223 |
aaattattacccttgtatactacatcaaccacagcttccctaaaagtaaatgagattatacttgccatcctcagactttccaatattacctaca |
33659130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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