View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20135_low_2 (Length: 607)
Name: NF20135_low_2
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 18 - 597
Target Start/End: Original strand, 51403026 - 51403605
Alignment:
| Q |
18 |
agcaagtaaaacttttgtatgttgcctattgaatgttgctgtcacttttgtaagtttcttatgtgaaaatgttcaacgcagggaggaatactgcttggac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51403026 |
agcaagtaaaacttttgtatgttgcctattgaatgttgctgtcacttttgtaagtttcttatgtgaaaatgttcaatgcagggaggaatactgcttggac |
51403125 |
T |
|
| Q |
118 |
catcagcaataggtcgaagtgagaaattcctacacacagttttcccaaagagaagcttaacagtcctagacacactagccaacattggtcttttgttctt |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51403126 |
catcagcaataggtcgaagcgagaaattcctacacacagttttcccaaagagaagcttaacagtcctagacacactagccaacattggtcttttgttctt |
51403225 |
T |
|
| Q |
218 |
cttattcctagtaggtcttgaactcgacatgcgttcaatccgtagaacaggtaaaaaagccttagcaattgccctctgtggaatcacattcccatttgtt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
51403226 |
cttattcctagtaggtcttgaactcgacatgcgttcaatccgtagaacaggtaaaaaagccttagcaattgccctttgtggaatcacattcccatttgtt |
51403325 |
T |
|
| Q |
318 |
cttggcataggaacatccattgttcttagagccacaatctccaaaggtgcacaacctgtccctttccttgtcttcatgggtgttgctctctcaatcacag |
417 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51403326 |
cttggcataggaacatccgttgttcttagagccacaatctccaaaggtgcacaacctgtccctttccttgtcttcatgggtgttgctctctcaatcacag |
51403425 |
T |
|
| Q |
418 |
catttcccgtcctcgctcgaatcctagctgagctcaaactgctaaccacggatgttggtcgtatagcaatgtcagcagctgctgttaatgatgttgcagc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51403426 |
catttcccgtcctcgctcgaatcctagctgagctcaaactgctaaccacggatgttggtcgtatagcaatgtcagcagctgctgttaatgatgttgcagc |
51403525 |
T |
|
| Q |
518 |
ctgggtacttctcgctctagccatatcattatctggcgatgacacgtcgcccctgatttcactttgggttatgctctgtg |
597 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51403526 |
ctgggtacttcttgctctagccatatcattatctggcgatgacacgtcgcccctgatttcactttgggttatgctctgtg |
51403605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 159 - 535
Target Start/End: Complemental strand, 29983660 - 29983284
Alignment:
| Q |
159 |
ttcccaaagagaagcttaacagtcctagacacactagccaacattggtcttttgttcttcttattcctagtaggtcttgaactcgacatgcgttcaatcc |
258 |
Q |
| |
|
||||| || |||||||||||||| || || ||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||| || | |
|
|
| T |
29983660 |
ttccctaaaagaagcttaacagttcttgatacactagccaacattggcctgctattcttcttatttctagtaggtcttgaactcgacatgcgttcgatac |
29983561 |
T |
|
| Q |
259 |
gtagaacaggtaaaaaagccttagcaattgccctctgtggaatcacattcccatttgttcttggcataggaacatccattgttcttagagccacaatctc |
358 |
Q |
| |
|
| | ||||||| |||||||||| || ||||| |||||||||| |||||||||| |||||||| || || || |||||||| | |||||||| |
|
|
| T |
29983560 |
gcaaaacaggttcaaaagccttatgcatagcccttgctggaatcacagtcccatttgtacttggcattggcacctcacttgttcttcgtgccacaataaa |
29983461 |
T |
|
| Q |
359 |
caaaggtgcacaacctgtccctttccttgtcttcatgggtgttgctctctcaatcacagcatttcccgtcctcgctcgaatcctagctgagctcaaactg |
458 |
Q |
| |
|
||||| ||| | || | |||||||| |||||||| ||||||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
29983460 |
caaagatgctaatccaacttccttccttgttttcatgggcgttgctctctcgatcacagcctttcctgtccttgctcgaatcctagctgaactcaaactc |
29983361 |
T |
|
| Q |
459 |
ctaaccacggatgttggtcgtatagcaatgtcagcagctgctgttaatgatgttgcagcctgggtacttctcgctct |
535 |
Q |
| |
|
|| || || ||||||||||| || ||||||||||| |||||||| ||||| || || || ||| ||||||| ||||| |
|
|
| T |
29983360 |
ctcacaaccgatgttggtcggatggcaatgtcagctgctgctgtcaatgacgtcgctgcttggatacttcttgctct |
29983284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University