View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20135_low_20 (Length: 299)

Name: NF20135_low_20
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20135_low_20
NF20135_low_20
[»] chr1 (3 HSPs)
chr1 (43-281)||(36833596-36833834)
chr1 (1-41)||(18431525-18431565)
chr1 (1-41)||(22788277-22788317)
[»] chr6 (2 HSPs)
chr6 (1-41)||(5013972-5014012)
chr6 (1-41)||(16693155-16693195)
[»] chr2 (1 HSPs)
chr2 (1-41)||(16916258-16916298)
[»] chr7 (1 HSPs)
chr7 (1-41)||(46437499-46437539)
[»] chr3 (2 HSPs)
chr3 (1-41)||(26555662-26555702)
chr3 (1-41)||(52118481-52118521)
[»] chr8 (1 HSPs)
chr8 (1-41)||(28535349-28535389)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 43 - 281
Target Start/End: Complemental strand, 36833834 - 36833596
Alignment:
Q  43 cgacacgtcaacacctctttgccaatgtctaacacgtggcatattcatatccttataagaacttctttgataattaagtgccatgctacacgtgcaatat 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36833834 cgacacgtcaacacctctttgccaatgtctaacacgtggcatattcatatccttataagaacttctttgataattaagtgccatgctacacgtgcaatat 36833735  T
Q  143 gttcaagtgtctcactacgcactatacgtttaaccgcacactttgttcatcatcaagatcactaataaccatatccactttgtgtaatttcccttccaaa 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36833734 gttcaagtgtctcactacgcactatacgtttaaccgcacactttgttcatcatcaagatcactaataaccatatccactttgtgtaattttccttccaaa 36833635  T
Q  243 aacaagactcaatttcttccaattattccatcaactcag 281  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36833634 aacaagactcaatttcttccaattattccatcaactcag 36833596  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18431565 - 18431525
Alignment:
Q  1 tcttctcacaaatcacaattcacaatcgtctttcatctcac 41  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  18431565 tcttctcacaaatcacaattcacaatcgtctttcttctcac 18431525  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22788317 - 22788277
Alignment:
Q  1 tcttctcacaaatcacaattcacaatcgtctttcatctcac 41  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  22788317 tcttctcacaaatcacaattcacaatcttctttcttctcac 22788277  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5014012 - 5013972
Alignment:
Q  1 tcttctcacaaatcacaattcacaatcgtctttcatctcac 41  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  5014012 tcttctcacaaatcacaattcacaatcgtctttcttctcac 5013972  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16693155 - 16693195
Alignment:
Q  1 tcttctcacaaatcacaattcacaatcgtctttcatctcac 41  Q
    |||||||||||||||||||||||||||  ||||| ||||||    
T  16693155 tcttctcacaaatcacaattcacaatctcctttcttctcac 16693195  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 16916298 - 16916258
Alignment:
Q  1 tcttctcacaaatcacaattcacaatcgtctttcatctcac 41  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  16916298 tcttctcacaaatcacaattcacaatcgtctttcttctcac 16916258  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46437499 - 46437539
Alignment:
Q  1 tcttctcacaaatcacaattcacaatcgtctttcatctcac 41  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  46437499 tcttctcacaaaacacaattcacaatcgtctttcttctcac 46437539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26555662 - 26555702
Alignment:
Q  1 tcttctcacaaatcacaattcacaatcgtctttcatctcac 41  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  26555662 tcttctcacaaatcacaattcacaatcttctttcttctcac 26555702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52118481 - 52118521
Alignment:
Q  1 tcttctcacaaatcacaattcacaatcgtctttcatctcac 41  Q
    |||||||||||||||||||||||||||  ||||| ||||||    
T  52118481 tcttctcacaaatcacaattcacaatctcctttcctctcac 52118521  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28535349 - 28535389
Alignment:
Q  1 tcttctcacaaatcacaattcacaatcgtctttcatctcac 41  Q
    |||||||||||||||||||||||||||  ||||| ||||||    
T  28535349 tcttctcacaaatcacaattcacaatctcctttcttctcac 28535389  T

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