View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_23 (Length: 286)
Name: NF20135_low_23
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_23 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 33817565 - 33817299
Alignment:
| Q |
20 |
atgcgatatctttttccggattaacactcttccaaaccttagaaatgatttggagttgatccatcgagaaaggtagatttgccgagaaagtccaataagt |
119 |
Q |
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| T |
33817565 |
atgcgataactttttccggattaacactcttccaaaccttagaaatgatttggagttgatccatcgagaaagatagatttgccgagagagtccaataagt |
33817466 |
T |
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| Q |
120 |
caagttattcgagtaaataccactagtattatgaacccaacgatcatcaatcaaggttaacaaaactccaactataaggcacaaaatattcgaaacaaac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33817465 |
caagttattcgagtaaataccactagtattatgaacccaacgatcatcaatcaaggttaacaaaactccaactataaggcacaaaatattcgaaacaaac |
33817366 |
T |
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| Q |
220 |
tggtgttctcatacaaatagtggcatcctctaggtaaggttcgaaactcaaacattctgaatctaat |
286 |
Q |
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|||||||| ||||||||||| || ||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
33817365 |
tggtgttcccatacaaatagcggtatcctctaggtaaggttcgaaactcgaacatcctgaatctaat |
33817299 |
T |
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