View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_24 (Length: 281)
Name: NF20135_low_24
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 97 - 270
Target Start/End: Complemental strand, 12635031 - 12634858
Alignment:
| Q |
97 |
tccatttggattaaaaaggtatataacttcaagacggaaggtcttaatgggaagtgcgggatctcgggacagtaaaacagaatagacgaattcgttaaag |
196 |
Q |
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| T |
12635031 |
tccatttggattaaaaaggtatataacctcaagacggaaggtcttaatgggaagtgcgggatctcgggacagtaaaacagagtagacgaattcgttaaag |
12634932 |
T |
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| Q |
197 |
cgaaaaagggtattttcgtcaaacagagtaaaacgttgttcggccgtgttggtgaaatacagagtggtaactga |
270 |
Q |
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| T |
12634931 |
cgaaaaagggtattttcgtcaaacagagtaaaacgttgttcggccgtgttggtgaagtagagagtggtaactga |
12634858 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 12635103 - 12635049
Alignment:
| Q |
50 |
cacatggagatgaagggattcaactccacgttgtagcacaaagttgatccatttg |
104 |
Q |
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| T |
12635103 |
cacatcgagatgaagggattcaactccacgttgtagcacaaagttgatccatttg |
12635049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 41662837 - 41662913
Alignment:
| Q |
120 |
taacttcaagacggaaggtcttaatgggaagtgcgggatctcgggacagtaaaacagaatagacgaattcgttaaag |
196 |
Q |
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| T |
41662837 |
taacttcaaggtggaaagtcttaatgggcaatgcaggatctcgggagagtaaaacagagtatacgaagtcgataaag |
41662913 |
T |
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