View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_25 (Length: 281)
Name: NF20135_low_25
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 53127938 - 53127661
Alignment:
| Q |
1 |
gatttgatgttgcatccatatcacccatcactcatctattaacagtagtcttttttcttattacaactcattatcttttataggaaacaagatatcgttc |
100 |
Q |
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| T |
53127938 |
gatttgatgttgcatccatatcacccatcactcatctattaacagtagtcttttttcttattacaactcattatcttttataggaaacaagatatcgttc |
53127839 |
T |
|
| Q |
101 |
acgccatttggatttgatgttgcatccagaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaagtaccttgatgaccgtgat |
200 |
Q |
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| T |
53127838 |
acgccatttggatttgatgttgcatcctgaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaaataccttgatgaccgtgat |
53127739 |
T |
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| Q |
201 |
ttcttggaggtttgttctctgtccaagtattttgacaccatctgcttataatttctttccttccatttaccttttctt |
278 |
Q |
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| T |
53127738 |
ttcttggaggtttgttctctgtccaagtattctgacaccatctgcttataatttctttccttccatttaccttttctt |
53127661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 53110075 - 53109825
Alignment:
| Q |
20 |
atcacccatcactcatctattaacagtagtcttttttcttattacaac-tcattatcttttataggaaacaagatatcgttcacgccatttggatttgat |
118 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||| |||| | ||||||||| |||||||||||||||||||| |||| |||||||||||| |
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| T |
53110075 |
atcacccatcgctcatctattaacagtagtcttttctcttattgcaacgtaattatcttt-ataggaaacaagatatcgtttacgctttttggatttgat |
53109977 |
T |
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| Q |
119 |
gttgcatccagaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaagtaccttgatgaccgtgatttcttggaggtttgttct |
218 |
Q |
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| T |
53109976 |
attgaattcagaaattcgagaaatattcaaaactagaagtaatatcatttcttacatccgaagattccttgatggccttgatttcatggaggtttgt--t |
53109879 |
T |
|
| Q |
219 |
ctgtccaagtattttgacaccatctgcttataatttctttccttccatttacct |
272 |
Q |
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|||||||| |||| ||| ||| |||||||||| |||| | |||| ||||||| |
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| T |
53109878 |
ctgtccaaatattctgatgccagttgcttataatatcttccattccctttacct |
53109825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 53115485 - 53115288
Alignment:
| Q |
35 |
tctattaacagtagtcttttttcttattacaac-tcattatcttttataggaaacaagatatcgttcacgccatttggatttgatgttgcatccagaagt |
133 |
Q |
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|||||||| ||| |||| |||||||||| |||| | ||| |||| |||||||||||||| |||||| ||||| ||||||||||| ||| || |||| | |
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| T |
53115485 |
tctattaatagtggtctcttttcttattgcaacgtaattgtcttgtataggaaacaagacatcgtttacgccccttggatttgatattgaattcagatat |
53115386 |
T |
|
| Q |
134 |
tcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaagtaccttgatgaccgtgatttcttggaggtttgttctctgtccaagtatt |
231 |
Q |
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| T |
53115385 |
tcgagaaatattccacactagaaatagaatcatttcttacatccagaggcaccttgatgaccttgattttatggaggtttgttctctgtccaagtatt |
53115288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 53127954 - 53127921
Alignment:
| Q |
95 |
tcgttcacgccatttggatttgatgttgcatcca |
128 |
Q |
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| T |
53127954 |
tcgttcatgccatttggatttgatgttgcatcca |
53127921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 15839134 - 15839220
Alignment:
| Q |
78 |
ttataggaaacaagatatcgttcacgccatttggatttgatgttgcatccagaagttcgagaaatattcaaaactagatgtaaaatc |
164 |
Q |
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||||||||||| |||||||| | ||||||||||||||||||| | || |||| |||||||||||||||| ||||| | ||||||| |
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| T |
15839134 |
ttataggaaactagatatcggttacgccatttggatttgatgcttaatacagaggttcgagaaatattcaggactaggtctaaaatc |
15839220 |
T |
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