View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_26 (Length: 279)
Name: NF20135_low_26
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 53538453 - 53538715
Alignment:
| Q |
1 |
taaagaatgatagtgctgattttcaatagtgagctctgccatctaattctaaccctcatcatatgattgttgaagcctttgatcaagtgaggacatggag |
100 |
Q |
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| T |
53538453 |
taaagaatgatagtgctgattttcaatagtgagctctgccatctaattctaaccctcatcatatgattgttgaagcctttgatcaagtgaggacatggag |
53538552 |
T |
|
| Q |
101 |
cctacatggtcacctaaccttccttctataattcattcaatcagctgctgtttgctctgatataaccctctggctgacagatcacatagagctccccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53538553 |
cctacatggtcacctaaccttccttctataattcattcaatcagctgctgtttgctctgatataaccccctggctgacagatcacatagagctccccaaa |
53538652 |
T |
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| Q |
201 |
atgctcccaaataccgctgctacaatccactgnnnnnnnntggtaattttaaaggaataaatt |
263 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53538653 |
atgctcccaaataccgctgctacaatccactgaaaaaaaatggtaattttaaaggaataaatt |
53538715 |
T |
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