View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_29 (Length: 271)
Name: NF20135_low_29
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 34860787 - 34861002
Alignment:
| Q |
1 |
aaaacaaaattattagaattttttagtcaaacaagtgagcaacaattttcatatgctaatatataggttcatatgtcgtatatcaacttcaaaactacta |
100 |
Q |
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| T |
34860787 |
aaaacaaaattattagaattttttagtcaaacaagtgagcaacaattttcataagctaatatataggttcatatgtcgtatatcaacttcaaaactacta |
34860886 |
T |
|
| Q |
101 |
aagatccaagtcaaggtgaagataacaaattcctacttctttcctatggtttgatgatactagtacataatcataatctggtacaaatcatcctatccat |
200 |
Q |
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| T |
34860887 |
aagatccaagtcaaggtgaagataacgaattcctacttctttcctatgctttgatgatactagtacataatcataatctggtacaaatcatcctatccat |
34860986 |
T |
|
| Q |
201 |
caatatcaagagcagt |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
34860987 |
caatatcaagagcagt |
34861002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 34860663 - 34860770
Alignment:
| Q |
2 |
aaacaaaattattagaattttttagtcaaacaagtgagcaacaattttcatatgctaatatataggttcatatgtcgtatatcaacttcaaaactactaa |
101 |
Q |
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|||||||| ||||| |||||| ||||||||||||| ||||||||| ||| ||||| ||||| ||||| ||||| ||||| |||||||| | ||||| |
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| T |
34860663 |
aaacaaaaatattatcatttttgagtcaaacaagtgcacaacaatttgaataagctaaaatataagttcacatgtcatatatgaacttcaacataactaa |
34860762 |
T |
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| Q |
102 |
agatccaa |
109 |
Q |
| |
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|||||||| |
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|
| T |
34860763 |
agatccaa |
34860770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 36341437 - 36341389
Alignment:
| Q |
29 |
aaacaagtgagcaacaattttcatatgctaatatataggttcatatgtc |
77 |
Q |
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|||||||||| ||||||||| |||| ||||||| ||| ||||||||||| |
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| T |
36341437 |
aaacaagtgaacaacaatttacataagctaatacataagttcatatgtc |
36341389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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