View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_30 (Length: 270)
Name: NF20135_low_30
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 517115 - 517355
Alignment:
| Q |
17 |
aaattcaagtcaaaacttttgaagacaaaattcttaccacgtcaaaaaggggatctgaccatagcctatgatgttcttcaatcgtatgacagcagctatc |
116 |
Q |
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| T |
517115 |
aaattcaagtcaaaacttttgaagacaaaattcttaccacgtcaaaaaggggatctgaccatagcctatgatgttcttcaatcgtatgacagcagctatc |
517214 |
T |
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| Q |
117 |
ttgttcaagtgaccatagataataataaccctttgggaaggttagatcattggaacttaacatgggagtggacaagaggtgaattcatacaaacaatgaa |
216 |
Q |
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| T |
517215 |
tagttcaagtgaccatagataataataaccctttgggaaggttagatcattggaacttaacatgggagtggacaagaggtgaattcatacaaacaatgaa |
517314 |
T |
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| Q |
217 |
aggtgctttcacacgtgagataacctacacaggttgcgtct |
257 |
Q |
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| T |
517315 |
aggtgctttcacacgtgagataacctacacaggttgcgtct |
517355 |
T |
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