View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_31 (Length: 269)
Name: NF20135_low_31
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 24800517 - 24800716
Alignment:
| Q |
1 |
aggatactaaattatatgcaaattgtgaaacattttgatgatggattgacgtaaaaaagagagaacaaaccacttattggtactaaaagtgtatcgattt |
100 |
Q |
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| T |
24800517 |
aggatactaaattatatgcaaattgtgaaacattttgatgatggattgacgtaaaaaagagagaacaaaccacttattggtactacaagtgtatcgattt |
24800616 |
T |
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| Q |
101 |
gagggatttgttcaagaaactccaaggatatggtaccttggccactataaagatcaaccagcaaacatgtcaaagagc-aaagagaagtatataaataag |
199 |
Q |
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| T |
24800617 |
gagggatttgttcaagaaactccaaggatatggtaccttggccactat-aagatcaaccagcaaacatgtcaaagagcaaaagagaagtatataaataag |
24800715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 24817593 - 24817792
Alignment:
| Q |
1 |
aggatactaaattatatgcaaattgtgaaacattttgatgatggattgacgtaaaaaagagagaacaaaccacttattggtactaaaagtgtatcgattt |
100 |
Q |
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| T |
24817593 |
aggatactaaattatatgcaaattgtgaaacattttgatgatggattgacgtaaaaaagagagaacaaaccacttattggtactacaagtgtatcgattt |
24817692 |
T |
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| Q |
101 |
gagggatttgttcaagaaactccaaggatatggtaccttggccactataaagatcaaccagcaaacatgtcaaagagc-aaagagaagtatataaataag |
199 |
Q |
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| T |
24817693 |
gagggatttgttcaagaaactccaaggatatggtaccttggccactat-aagatcaaccagcaaacatgtcaaagagcaaaagagaagtatataaataag |
24817791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 24817910 - 24817944
Alignment:
| Q |
216 |
aagctattaccacaaaaatgttaaaacacgatatt |
250 |
Q |
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| T |
24817910 |
aagctattagcacaaaaatgttaaaacacgatatt |
24817944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 40867826 - 40867955
Alignment:
| Q |
16 |
atgcaaattgtgaaacattttg-atgatggattgacgtaaaaaagagagaacaaaccacttattggtactaaaagtgtatcgatttgagggatttgttca |
114 |
Q |
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| T |
40867826 |
atgcaaattttgaaacattttggatgatggtttgacatcaaaaagcaa--acaaaccacttattggtaccacaagtgtatctagttgaggggcttgttcc |
40867923 |
T |
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| Q |
115 |
agaaactccaaggatatggtaccttggccact |
146 |
Q |
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| T |
40867924 |
agaagctccaaggatatggtaccctggccact |
40867955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 41876251 - 41876111
Alignment:
| Q |
4 |
atactaaattatatgcaaattgtgaaacattttgatgatggattgacgtaaaaaagagagaacaaaccacttattggtactaaaagtgtatcgatttgag |
103 |
Q |
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| T |
41876251 |
atactaaaatttatgaaaattttaaaacatttggttgatggattaacataaaaatgaga--acaaaccacttataggtactacaagagtatcaatctgag |
41876154 |
T |
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| Q |
104 |
ggatttgttcaagaaactccaaggatatggtaccttggccact |
146 |
Q |
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| T |
41876153 |
gggcttgttccaaaagctccaaggatatggtaccttggccact |
41876111 |
T |
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