View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_33 (Length: 252)
Name: NF20135_low_33
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 45313179 - 45313418
Alignment:
| Q |
1 |
cataggtcaaaacaaggaggggatttttagcatatttggtaagaattgcgaccttgcgttgttcaatcatcataatacaatttcatgtctgatgcatttt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45313179 |
cataagtcaaaacaaggaggggatttttagcatatttggtaagaattgcgaccttgcgttgttcaatcatcataatacaatttcatgtctgatgcatttt |
45313278 |
T |
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| Q |
101 |
acttttgatacatggtatttgttacaaata----tctcnnnnnnncctacaggatattggggtatgtaccttattggtgttcatataggaaactatcttc |
196 |
Q |
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| T |
45313279 |
acttctgatacatggtatttgttacaaatatctttctttttttttcctacaggatattgggttatgtaccttattggtgttcatataggaaactatcttc |
45313378 |
T |
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| Q |
197 |
tctttggaagccattccactgcatttaagagtagcagatg |
236 |
Q |
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| T |
45313379 |
tctttggaagccattccactgcatttaagagtagcagatg |
45313418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 27758865 - 27759097
Alignment:
| Q |
1 |
cataggtcaaaacaaggaggggatttttagcatatttggtaagaattgcgaccttgcgttgttcaatcatcataatacaatttcatgtctgatgcatttt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27758865 |
cataagtcaaaacaaggaggggatttttagcatatttggtaagaattgcgaccttgcgttgttcaatcatcataatacaatttcatgtctgatgcatttt |
27758964 |
T |
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| Q |
101 |
acttttgatacatggtatttgttacaaatatctcnnnnnnncctacaggatattggggtatgtaccttattggtgttcatataggaaactatcttctctt |
200 |
Q |
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|||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27758965 |
acttctgatacatggtatttgttacaaacatct---tttttcctacaggatattggggtatgtaccttattggtgttcaaataggaaactatcttctctt |
27759061 |
T |
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| Q |
201 |
tggaagccattccactgcatttaagagtagcagatg |
236 |
Q |
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|||||||||||| ||||| ||||||||||||||||| |
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| T |
27759062 |
tggaagccattctactgcttttaagagtagcagatg |
27759097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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