View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_34 (Length: 241)
Name: NF20135_low_34
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 53128071 - 53128292
Alignment:
| Q |
1 |
ttacatggaaaagcctacttcggtctatctcaatctatttcttatccacgccccgaaccaccaaacgaggaagatatactgcatgctattgcatactaac |
100 |
Q |
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| T |
53128071 |
ttacatggaaaagcctacttcggtctatctcaatctatttcttatccacgccccaaaccaccaaacga---agatatactgcatgctattgcatactaac |
53128167 |
T |
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| Q |
101 |
gttttctaagttacatgtttttccatttaattataatctgcttgaaaacagttcccagaaaataagataatatagggcacaaaagcaatgaaagaaaata |
200 |
Q |
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| T |
53128168 |
gttttctaagttacatgtttttccatttaattataatctgcttgaaaacagttcccagaaaataagataatatagggcacaaaagcaatgaaagaaaata |
53128267 |
T |
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| Q |
201 |
tcgaagtacttttcgtactaataat |
225 |
Q |
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| T |
53128268 |
tcaaagtacttttcgtactaataat |
53128292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 53110469 - 53110626
Alignment:
| Q |
22 |
ggtctatctcaatctatttcttatccacgccccgaaccaccaaacgaggaagatatactgcatgctattgcatactaacgttttctaagttacatgtttt |
121 |
Q |
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| T |
53110469 |
ggtctatatcaatccattttttatccta-ccccaaaccaccaaaaaaggaaggagtactgaatgctattgcaccctaacattttctcagtaacatgtgtt |
53110567 |
T |
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| Q |
122 |
tccatttaattataatctgcttgaaaacagttcccagaaaataagataatatagggcac |
180 |
Q |
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| T |
53110568 |
tccatttaattacaatatgcttgaaaataaaccccagaaaatgagatagtattgggcac |
53110626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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