View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20135_low_35 (Length: 240)

Name: NF20135_low_35
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20135_low_35
NF20135_low_35
[»] chr4 (5 HSPs)
chr4 (36-224)||(55448839-55449028)
chr4 (97-151)||(624548-624600)
chr4 (120-164)||(28815700-28815744)
chr4 (120-148)||(31187493-31187521)
chr4 (97-148)||(37868520-37868569)
[»] chr5 (3 HSPs)
chr5 (97-162)||(25460719-25460783)
chr5 (97-151)||(18890394-18890448)
chr5 (97-164)||(6167280-6167345)
[»] scaffold0003 (1 HSPs)
scaffold0003 (103-162)||(315723-315780)
[»] chr6 (1 HSPs)
chr6 (96-151)||(6196299-6196352)
[»] chr8 (1 HSPs)
chr8 (97-151)||(26217859-26217911)
[»] chr3 (2 HSPs)
chr3 (97-151)||(40739161-40739213)
chr3 (97-143)||(34102134-34102180)
[»] scaffold0006 (1 HSPs)
scaffold0006 (116-162)||(60336-60382)
[»] chr2 (2 HSPs)
chr2 (124-162)||(43398402-43398440)
chr2 (97-143)||(43214422-43214465)
[»] chr1 (2 HSPs)
chr1 (97-165)||(5863040-5863106)
chr1 (124-153)||(35283594-35283623)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 55448839 - 55449028
Alignment:
Q  36 taggataataaacaaacataagaaaaatcattaattaacaaatttcgaacctca-acagcttacacctcacttctccacgttttaaaaatgtgtgagctc 134  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  55448839 taggataataaacaaacataagaaaaatcattaattaacatatttcgaatctcagacagcttacacctcacttctccacgttttaaaaatgtgtgagctc 55448938  T
Q  135 taaccactaaactacttaataaagaaaatataaagtaaacaactaaattttgatagcaccatacacacatatgtatatataccttgaacc 224  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55448939 taaccactagactacttaataaagaaaatataaagtaaacaactaaattttgatagcaccatacacacatatgtatatataccttgaacc 55449028  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 624548 - 624600
Alignment:
Q  97 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactactt 151  Q
    ||||| ||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  624548 acaccccacttctccacattt--aaaatgtgtgagctctaaccactaaactactt 624600  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 28815700 - 28815744
Alignment:
Q  120 aaaatgtgtgagctctaaccactaaactacttaataaagaaaata 164  Q
    |||||||||||||||||||||||| ||||||| | ||| ||||||    
T  28815700 aaaatgtgtgagctctaaccactagactacttgacaaaaaaaata 28815744  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 31187521 - 31187493
Alignment:
Q  120 aaaatgtgtgagctctaaccactaaacta 148  Q
    |||||||||||||||||||||||||||||    
T  31187521 aaaatgtgtgagctctaaccactaaacta 31187493  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 37868569 - 37868520
Alignment:
Q  97 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaacta 148  Q
    |||||||||||||||||  ||  ||| |||||||||||||||||||||||||    
T  37868569 acacctcacttctccacaatt--aaattgtgtgagctctaaccactaaacta 37868520  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 25460783 - 25460719
Alignment:
Q  97 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactacttaataaagaaaa 162  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||| ||||    
T  25460783 acaccccacttctccacattt-aaaaatgtgtgagctctaaccactagactacttgataaaaaaaa 25460719  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 18890394 - 18890448
Alignment:
Q  97 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactactt 151  Q
    ||||| ||||||||||| ||| |||||||||||| |||||||||||| |||||||    
T  18890394 acaccccacttctccacatttaaaaaatgtgtgacctctaaccactagactactt 18890448  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 6167280 - 6167345
Alignment:
Q  97 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactacttaataaagaaaata 164  Q
    ||||||||||||||||| |||  ||||||||||||||||| ||||||  |||||||| ||| ||||||    
T  6167280 acacctcacttctccacattt--aaaatgtgtgagctctagccactaggctacttaacaaaaaaaata 6167345  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 315723 - 315780
Alignment:
Q  103 cacttctccacgttttaaaaatgtgtgagctctaaccactaaactacttaataaagaaaa 162  Q
    ||||||||||| |||  ||||||||||| |||||||||||||||||||| ||||| ||||    
T  315723 cacttctccacattt--aaaatgtgtgaactctaaccactaaactacttgataaaaaaaa 315780  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 6196352 - 6196299
Alignment:
Q  96 tacacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactactt 151  Q
    |||| |||||||||||||||||  |||||||||||||| ||||||||||| |||||    
T  6196352 tacatctcacttctccacgttt--aaaatgtgtgagctttaaccactaaattactt 6196299  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 26217859 - 26217911
Alignment:
Q  97 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactactt 151  Q
    ||||||||||||||||| |||  ||||||||||| ||| ||||||||||||||||    
T  26217859 acacctcacttctccacattt--aaaatgtgtgatctccaaccactaaactactt 26217911  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 40739213 - 40739161
Alignment:
Q  97 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactactt 151  Q
    |||||||||||||||| ||||  ||||||||||||||||| |||||| |||||||    
T  40739213 acacctcacttctccatgttt--aaaatgtgtgagctctagccactagactactt 40739161  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 34102134 - 34102180
Alignment:
Q  97 acacctcacttctccacgttttaaaaatgtgtgagctctaaccacta 143  Q
    |||||||| |||||||| ||| |||||||||||||||| ||||||||    
T  34102134 acacctcatttctccacatttaaaaaatgtgtgagctccaaccacta 34102180  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 60336 - 60382
Alignment:
Q  116 tttaaaaatgtgtgagctctaaccactaaactacttaataaagaaaa 162  Q
    ||||||||||||||| ||||||||||||| |||||| ||||| ||||    
T  60336 tttaaaaatgtgtgaactctaaccactaagctacttgataaaaaaaa 60382  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 43398402 - 43398440
Alignment:
Q  124 tgtgtgagctctaaccactaaactacttaataaagaaaa 162  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  43398402 tgtgtgagctctaaccactagactacttgataaagaaaa 43398440  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 43214422 - 43214465
Alignment:
Q  97 acacctcacttctccacgttttaaaaatgtgtgagctctaaccacta 143  Q
    |||||||||||||||||||||   || ||||||||||||||||||||    
T  43214422 acacctcacttctccacgttt---aattgtgtgagctctaaccacta 43214465  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 5863040 - 5863106
Alignment:
Q  97 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactacttaataaagaaaatat 165  Q
    |||||||||||||||  || || |||||||||||| ||||||||||| ||||||| | ||| |||||||    
T  5863040 acacctcacttctcc--gtatttaaaatgtgtgagttctaaccactagactacttgacaaaaaaaatat 5863106  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 35283594 - 35283623
Alignment:
Q  124 tgtgtgagctctaaccactaaactacttaa 153  Q
    ||||||||||||||||||||||||||||||    
T  35283594 tgtgtgagctctaaccactaaactacttaa 35283623  T

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