View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_4 (Length: 492)
Name: NF20135_low_4
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 1217723 - 1217439
Alignment:
| Q |
19 |
ccatgacccactcttacacttagacaatcatgcagtcaaatagttgacacctcaaagtcgttggatcaagatcagacactttacattataagtttgataa |
118 |
Q |
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| T |
1217723 |
ccatgacccactcttacacttagataatcatgcagtcaaatagttgacacctcagagtcgttggatcaagatcagacactttacattataaatttgataa |
1217624 |
T |
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| Q |
119 |
atatatatgtccaataaggatcaaccgcttagattatcaactgcataaatgcatgatcccatgaaattcattttccaaatttcacatagaagattagatc |
218 |
Q |
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| T |
1217623 |
atatatatgtccaataaggatcaaccgtttagattatcaactgcataaatgcatgaccgcatgaaattcattttccaaatttcacatagaagattagatc |
1217524 |
T |
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| Q |
219 |
tcgagtcacaaaatattgtagtcgcccattattgactgttagatgaagatgatcagacaatttgtattttagcttctatgatctt |
303 |
Q |
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| T |
1217523 |
tcgagttacaaaatgttgtagtcgcccatcattgactgttagatgaagatgatcagacaatttgtattttagcttctatgatctt |
1217439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 288 - 480
Target Start/End: Complemental strand, 1217098 - 1216906
Alignment:
| Q |
288 |
tagcttctatgatcttatttacaataaaacttaaaaatcataagtgtcactaacatggtatgtgacacaaatggtagatagctgagtatgtcaattattt |
387 |
Q |
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| T |
1217098 |
tagcttctatgatcttatttacaataaaacttaaaaatcataagtgtcactaacatggtatgtgacacaaatggtagatagctgagtatgtcaattattt |
1216999 |
T |
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| Q |
388 |
ggtcaaatgttcaactatggatagtcgatcatttaaacaactctgagttatctcgagaaattagtttatgcaattacatgtgattgatgcctt |
480 |
Q |
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| T |
1216998 |
ggtcaaatgttcaactatggataatcgatcatttaaacaactctaggttatctcgagaaattagtttatgcaattacatgtgattgatgcctt |
1216906 |
T |
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