View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_5 (Length: 474)
Name: NF20135_low_5
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Complemental strand, 55169438 - 55169005
Alignment:
| Q |
17 |
agcaaagaagtgagtgatcatcaaatatagatagaattgatcgatatgggaaggtcctcttgctgtgagaaaggtcacataaacaaaggagcatggagca |
116 |
Q |
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| T |
55169438 |
agcaaagaagtgagtgatcatcaaatatagatagaattgatcgatatgggaaggtccccttgctgtgagaaaggtcacataaacaaaggagcatggagca |
55169339 |
T |
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| Q |
117 |
aagaagaagatgagcggctgatagcttatattagagctcacggtgagggatgctggcgctctctccgaaaagccgctggtcttctccgttgcggtaagag |
216 |
Q |
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| T |
55169338 |
aagaagaagatgagcggctg----------------ctcacggtgagggatgctggcgctctctcccaaaagccgctggtcttctccgttgcggtaagag |
55169255 |
T |
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| Q |
217 |
ttgccgtctccggtggatcaactacctccgccccgacctcaaacgtggaaatttcacccaacaagaagatcaactcatcataaaactccacactctcctc |
316 |
Q |
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| T |
55169254 |
ttgccgtctccggtggatcaactacctacgccccgacctcaaacgtggaaatttcacccaacaagaagatcaactcatcataaaactccacactctcctc |
55169155 |
T |
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| Q |
317 |
ggtaacaagtaagctacactatcgttcttgagtatttttagactttaccccaatttgatctttcgtaatttccttgcaactagtcttggatnnnnnnntt |
416 |
Q |
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| T |
55169154 |
ggtaacaagtaagctacactatcgttcttgagtatttttagacttta-cccaatttgatctttcgtaatttccttgcaactagtcttatataaaaaaatt |
55169056 |
T |
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| Q |
417 |
atatccaaactagtcacttagatttttatatagggtcgtattaatcctttg |
467 |
Q |
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| T |
55169055 |
atatccaaactagtcacttagatttttatatagggtcgcattaatcctttg |
55169005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 329
Target Start/End: Original strand, 27808038 - 27808307
Alignment:
| Q |
60 |
atatgggaaggtcctcttgctgtgagaaaggtcacataaacaaaggagcatggagcaaagaagaagatgagcggctgatagcttatattagagctcacgg |
159 |
Q |
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|||||||||| || |||| ||||| |||| ||| | |||||||||||| |||| |||||||||||||| | || ||| | |||||||| || || || |
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| T |
27808038 |
atatgggaagatcaccttgttgtgaaaaagctcatacaaacaaaggagcttggacaaaagaagaagatgatagacttatatcatatattagggcacatgg |
27808137 |
T |
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| Q |
160 |
tgagggatgctggcgctctctccgaaaagccgctggtcttctccgttgcggtaagagttgccgtctccggtggatcaactacctccgccccgacctcaaa |
259 |
Q |
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| T |
27808138 |
tgaaggttgttggagatctctccctaaagcagctggcttactccgatgtggtaaaagttgtcgtctccggtggattaactatctcaggccagaccttaaa |
27808237 |
T |
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| Q |
260 |
cgtggaaatttcacccaacaagaagatcaactcatcataaaactccacactctcctcggtaacaagtaag |
329 |
Q |
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| T |
27808238 |
cgtggtaactttacagaagaagaagatgaactcatcatcaaactccatagtcttcttggtaacaagtaag |
27808307 |
T |
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