View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_6 (Length: 428)
Name: NF20135_low_6
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 30956792 - 30956392
Alignment:
| Q |
18 |
ctatacttgtaaaatctcggacaattcctctaaactaacatcaacatcttcaacattttgtttccctttagataggaacctccagctcaagtaagctaat |
117 |
Q |
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| T |
30956792 |
ctatacttgtaaaatctccgacaattcctctaaactaacatcaacatcttcaacattttgtttccctttagataggaacctccagctcaagtaagctaat |
30956693 |
T |
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| Q |
118 |
agtaatgtcaatatcccacaaataagggaaagcccaacggcccctaaagttgcaaaccatattagaggcaacttgaacaatccacaatcaacaccaacct |
217 |
Q |
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| T |
30956692 |
agtaatgtcaatatcccacaaataagggaaagcccaacggcccctaaagttgcaaaccatattagaggcaactcgaacaatccacaatcaacaccaacct |
30956593 |
T |
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| Q |
218 |
ttgaagccttgcgaaccagctcgggaaagtaaaaaaggggtgcagaaattattagtagtatacagaaaatctgcagtccaagttgtagtgaacaaaccaa |
317 |
Q |
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| T |
30956592 |
ttgaagccctgcgaaccagctcgggaaagtaaaaaaggggtgcagaaattattagtagtatacagaaaatctgcagtccaagttgtagtgaacaaaccaa |
30956493 |
T |
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| Q |
318 |
catcagagtcagaaaataacacaacatgaactttgtgatatgtgttatttctggaaagaatgcttcaaatgcttccccaaaggcaagtactagtgtctgt |
417 |
Q |
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| T |
30956492 |
catcagagtcagaaaataacacaacatgaactttgtgatgtgtgttatttctggaaagaatacttcaaatgcttccccaaaggcaagtactagtgtttgt |
30956393 |
T |
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| Q |
418 |
g |
418 |
Q |
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| T |
30956392 |
g |
30956392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 78 - 412
Target Start/End: Complemental strand, 30960718 - 30960375
Alignment:
| Q |
78 |
tttccctttagataggaacctccagctcaagtaagctaatagtaatgtcaatatcccacaaataagggaaagcccaacggcccctaaagttgcaaaccat |
177 |
Q |
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|||||||||| ||| |||||||||||| || ||| | | ||| ||||||| || |||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
30960718 |
tttccctttatataagaacctccagcttaaataaaccattagcaatgtcactaaaccacaaatgagggaaaggccaacagcccctaaagttgcaaaccca |
30960619 |
T |
|
| Q |
178 |
attagaggcaacttgaacaatccacaat---caacaccaacctttgaa------gccttgcgaaccagctcgggaaagtaaaaaaggggtgcagaaatta |
268 |
Q |
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| T |
30960618 |
atcaaaggcaacttgaatgttccaccacatgccacatcaacccctgaaactgaagccttgcgaaccagctcggggaagtaaaaaaagggtgcagaaatca |
30960519 |
T |
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| Q |
269 |
ttagtagtatacagaaaatctgcagtccaagttgtagtgaacaaaccaacatcagagtcagaaaataacacaacatgaactttgtgatatgtgttatttc |
368 |
Q |
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| T |
30960518 |
atagtagcatacaaaatatttgtaatccaggttgtagtggaacaaccaacatcaatgtcagaaaataacacaaaatgaactttgctatttgtgtcatttc |
30960419 |
T |
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| Q |
369 |
tggaaagaatgcttcaaatgcttccccaaaggcaagtactagtg |
412 |
Q |
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| T |
30960418 |
tggaaagaatgctttaaatgcttccccaaatggaagtactagtg |
30960375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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