View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20135_low_7 (Length: 423)
Name: NF20135_low_7
Description: NF20135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20135_low_7 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 6310038 - 6309629
Alignment:
| Q |
18 |
ttaccttcatacattctttgattttagaaacaacttatacgtaaatgcttatcatgtaagcatataaattataattatgtttattga----aacactcca |
113 |
Q |
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| T |
6310038 |
ttaccttcatacattctttgattttagaaacaacttatacgtaaatgcttatcatgtaagcatataaattataattatgtttattcattcaaacactcca |
6309939 |
T |
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| Q |
114 |
aaacccaatttatatagaattaagcgtcacacaagttaatactatacggtcaaatgatattcagtacatattacatagacaatctaacaaagaattatca |
213 |
Q |
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| T |
6309938 |
aaacccaatttatatagaattaagcgtcacacaagttaatactatacggtcaaatgatattcagtacatattacatagacaatctaacaaagaattatca |
6309839 |
T |
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| Q |
214 |
ctggtgaatgcaaaaatgctatagtaactataaaaattgtcaagttattcttatacctcttcgagcagcgagcaaagcggattcattgacgatgtttgca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6309838 |
ttggtgaatgcaaaaatgctatagtaactataaaaattgttaagttattcttatacctcttcgagcagcgagcaaagcggattcattgacgatgtttgca |
6309739 |
T |
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| Q |
314 |
agatcagcacctacgagaccatcagtaactgtggcaattaaatgacatatgatgtttgcatcctcctccaaaggaactcctctcaaatgcacagctaata |
413 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6309738 |
agatcagcacctacgagaccatcagtgactgtggcaattaaatgacatatgatgttagcatcctcctccaaaggaactcctctcaaatgcacagctaata |
6309639 |
T |
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| Q |
414 |
tttttctcct |
423 |
Q |
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| T |
6309638 |
tttttctcct |
6309629 |
T |
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