View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20136_high_1 (Length: 504)
Name: NF20136_high_1
Description: NF20136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20136_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 35 - 495
Target Start/End: Original strand, 1184266 - 1184724
Alignment:
| Q |
35 |
aaatataagagtagattatatggtgtagtgtttgacttatgactatgttctgtttgaatcttggttggtaaaaactaaggagaattaaatttacccttct |
134 |
Q |
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| T |
1184266 |
aaatataagagtagattatatggtgtagtgtttgacttatgactatgttctgtttgaatcttggttggtaaaaactaaggagaattaaatttacccttct |
1184365 |
T |
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| Q |
135 |
cgagtttaagtatagaatgtgccatgctatttgcggctaaaggaaataatcacaagttttacgaattgttaaaaaagggaaaatatttttgtccgaattt |
234 |
Q |
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| T |
1184366 |
cgagtttaagtatagaatgtgcaatgctatttgcggctaaaggaaataatcacaagttttacgaattgttaaaaaagggaaaatatttttgtccgaattt |
1184465 |
T |
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| Q |
235 |
gtggacaacattttcttatacgaacacaaaaagaagtaaaataacataattactaagtagttaattcactaattgaactaatttgatgcttgaacacatg |
334 |
Q |
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| T |
1184466 |
gtggccaacattttcttatacgaacacaaaaagaagtaaaataacataattactgagtagttaattcactaattgaactaatttgatgcttgaacacatg |
1184565 |
T |
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| Q |
335 |
ctgcatgattaatgaattgttctcgaagccatcatcatccacattacannnnnnnnnnctttctttcacaaaacagtgagagagtatataatatggtcac |
434 |
Q |
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| T |
1184566 |
ctgcatgattaatgaattgttctcgaagccatgatcatccacattaca--ttttttttctttctttcacaaaacagtgagagagtatataatatggtcac |
1184663 |
T |
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| Q |
435 |
actttcacagcacgcattgaaattctatagcttccacgttgttgtgatgcttctcctttgc |
495 |
Q |
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| T |
1184664 |
acttttacaccacgcattgaaattctatagcttccacgttgttgtcatgcttctcttttgc |
1184724 |
T |
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