View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20136_high_4 (Length: 254)
Name: NF20136_high_4
Description: NF20136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20136_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 35137027 - 35136865
Alignment:
| Q |
1 |
tgagtttgaaattgaatggttatactctttgtggtggcgagggttggtacgtcatcatccacctcatagagattttttagtgctcttattgaagtttttc |
100 |
Q |
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| T |
35137027 |
tgagtttgaaattggatggttatactctttgtggtggcgagggttggtacgtcatcatccacctcatagagattttttagtgctcttattgaagtttttc |
35136928 |
T |
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| Q |
101 |
gtactccagcatttcttatcattcaatgtccacccaagatatttcaagtatatatatatcctt |
163 |
Q |
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| T |
35136927 |
gtactccagcatttcttatcattcaatgtccacccaagatatttcaagtatatatatatcctt |
35136865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 35136797 - 35136733
Alignment:
| Q |
179 |
tcccaaatgaaatagcgatgcacaaatatcttgctcgtcatctcctccaacactgtttatttctt |
243 |
Q |
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| T |
35136797 |
tcccaaatgaaatagcgatgcacaaatatcttgctcgtcatctcctccaacactgtttatttctt |
35136733 |
T |
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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 43841846 - 43841905
Alignment:
| Q |
54 |
atcatccacctcatagagattttttagtgctcttattgaagtttttcgtactccagcatt |
113 |
Q |
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| T |
43841846 |
atcatccatctcatagagattttgcagtgctcttattgaagtttttcttacaccagcatt |
43841905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 43841999 - 43842035
Alignment:
| Q |
116 |
ttatcattcaatgtccacccaagatatttcaagtata |
152 |
Q |
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| T |
43841999 |
ttatcattcagtgtccacccaagatatttcaagtata |
43842035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 35129591 - 35129547
Alignment:
| Q |
202 |
aaatatcttgctcgtcatctcctccaacactgtttatttcttctc |
246 |
Q |
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| T |
35129591 |
aaatatcttgctcatcatctcctccaacagtgttattttcttctc |
35129547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 18145171 - 18145268
Alignment:
| Q |
54 |
atcatccacctcatagagattttttagtgctcttattgaagtttttcgtactccagcatttcttatcattcaatgtccacccaagatatttcaagtata |
152 |
Q |
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| T |
18145171 |
atcatccatctcatagagattttgcagtgctcttattgaagattttcttacaccagcatat-ttgtcattcagtgtccacccaagatatttcaagtata |
18145268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 18220490 - 18220393
Alignment:
| Q |
54 |
atcatccacctcatagagattttttagtgctcttattgaagtttttcgtactccagcatttcttatcattcaatgtccacccaagatatttcaagtata |
152 |
Q |
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|||||||| |||||||||||||| |||||||||||||||| ||||| ||| ||||||| | || ||||||| |||||||||||||||||||||||||| |
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| T |
18220490 |
atcatccatctcatagagattttgcagtgctcttattgaagattttcttacaccagcatat-ttgtcattcagtgtccacccaagatatttcaagtata |
18220393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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