View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20136_low_1 (Length: 634)
Name: NF20136_low_1
Description: NF20136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20136_low_1 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 280 - 484
Target Start/End: Original strand, 40033834 - 40034038
Alignment:
| Q |
280 |
cgtattcgatcatgataataatgtttatgcttaagtttatgtctttccttttgattcgttggatgtttgtttatatgtctgaatcggtagtttttatttg |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40033834 |
cgtattcgatcatgataataatgtttatgcttaagtttatgcttttccttttgattcgttggatgtttgtttatatgtctgaatcggtagtttttatttg |
40033933 |
T |
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| Q |
380 |
ttgtgaatttatgttctttttcagcatcgttctatgtttttagtgtgttaatcgtttatgtttttgaattatgctgtaacatattattatatttatacat |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40033934 |
ttgtgaatttatgttctttttcagcatcgttctatgtttttagtgtgttaatcgtttatgtttttgaattatgctgtaacatattattatatttatacat |
40034033 |
T |
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| Q |
480 |
gtcat |
484 |
Q |
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||||| |
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| T |
40034034 |
gtcat |
40034038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 40033572 - 40033790
Alignment:
| Q |
15 |
cagagagtggcggtgcatgcaaaaacaaagggcaattccgtcaaaataaagaaaaacgacgctgcaccatataaatcatgtaaccctgtttattctctca |
114 |
Q |
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| T |
40033572 |
cagagagtggcggtgcatgcaaaaacaaagggcaattccgtcaaaataaagaaaaacgacgctgcaccatataaatcatgtaaccctgtttattctctca |
40033671 |
T |
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| Q |
115 |
ccatttcattttctctaccggttctagggtttctgagtaacttcattcaaggtaaatttctttcgcacaatttagggtacaatttcatttctatttgatg |
214 |
Q |
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| T |
40033672 |
ccatttcattttc---------tctagggtttctgagtaacttcattcaaggtaaatttctttctcacaatttagggtacaatttcgtttctatttgatg |
40033762 |
T |
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| Q |
215 |
tgttcttatcatttaggatagttagata |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
40033763 |
tgttcttatcatttaggatagttagata |
40033790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 481 - 561
Target Start/End: Original strand, 40034100 - 40034180
Alignment:
| Q |
481 |
tcattatgcaatttttgatgtgtgggaatgttattttgctgttgctatataagtattttattttactattgaatgaatact |
561 |
Q |
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| T |
40034100 |
tcattatgcaatttttgacttgtgggaatgttattgtgttgttgctatataagtattttattttactattgaatgaatact |
40034180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 559 - 634
Target Start/End: Complemental strand, 14544725 - 14544650
Alignment:
| Q |
559 |
actattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
634 |
Q |
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| T |
14544725 |
actattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
14544650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 559 - 634
Target Start/End: Complemental strand, 26290849 - 26290774
Alignment:
| Q |
559 |
actattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
634 |
Q |
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| T |
26290849 |
actattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
26290774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 559 - 634
Target Start/End: Complemental strand, 508239 - 508164
Alignment:
| Q |
559 |
actattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
634 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
508239 |
actattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
508164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 559 - 634
Target Start/End: Original strand, 8241313 - 8241388
Alignment:
| Q |
559 |
actattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
634 |
Q |
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| T |
8241313 |
actattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
8241388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 559 - 634
Target Start/End: Complemental strand, 6932175 - 6932100
Alignment:
| Q |
559 |
actattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
634 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6932175 |
actattcatgaacatcacagcaaatgtgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
6932100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 585 - 634
Target Start/End: Original strand, 9292837 - 9292886
Alignment:
| Q |
585 |
tgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
634 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9292837 |
tgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
9292886 |
T |
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