View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20136_low_3 (Length: 415)
Name: NF20136_low_3
Description: NF20136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20136_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 2682439 - 2682340
Alignment:
| Q |
8 |
attatactttttccccttgcaataagttcattttcaaaagagtctcttaatttaaaaaattaaactaatctaatattttcta-ttagattgaatatatct |
106 |
Q |
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| T |
2682439 |
attatactttttccccttgcaataagttcattttcaaaagagtctcttaatttacaaaattaaactaatctaatattttctatttaaattgaatatatct |
2682340 |
T |
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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 2682279 - 2682196
Alignment:
| Q |
167 |
ggacaacatttaaatctttctgccagttgtaaaattggtcattgtttctatcgttattaataaacaaattctcttttcttggtg |
250 |
Q |
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| T |
2682279 |
ggacaacatttaaatctttctgccagttgtaaaattggtcattatttctatcgttattaataaacaaattctcttttcttggtg |
2682196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 2682122 - 2682045
Alignment:
| Q |
324 |
ccactactgtcccaagatcattgcacaaccgaatgatgagagacacattgtagaccaaatcatcatatatgaatggag |
401 |
Q |
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| T |
2682122 |
ccactactgtcccaagatcattgcacaaccgaatgatgagagacacattgtagaccaaatcatcatatatgaatggag |
2682045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 320 - 394
Target Start/End: Complemental strand, 2687656 - 2687582
Alignment:
| Q |
320 |
gttaccactactgtcccaagatcattgcacaaccgaatgatgagagacacattgtagaccaaatcatcatatatg |
394 |
Q |
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| T |
2687656 |
gttaccactgcggttccaagatcattgcacaaccgaatgatgagagaaacattgtagaccaaatcatcatatatg |
2687582 |
T |
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