View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20136_low_4 (Length: 360)
Name: NF20136_low_4
Description: NF20136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20136_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 2490459 - 2490800
Alignment:
| Q |
1 |
ttgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtggaagtgatctgaaggttt |
100 |
Q |
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| T |
2490459 |
ttgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtggaagtgatctgaaggttt |
2490558 |
T |
|
| Q |
101 |
ttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagtttctgatgtcttaatgcattttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490559 |
ttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagtttctgatgtcttaatgcattttcc |
2490658 |
T |
|
| Q |
201 |
attttcattaattgttaaatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagcaagagatacaaaaggattcggtaactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490659 |
attttcattaattgttaaatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagcaagagatacaaaaggattcggtaactt |
2490758 |
T |
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| Q |
301 |
ggcaatttctctaaagatttactataatcctattatcctatg |
342 |
Q |
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| T |
2490759 |
ggcaatttctctaaagatttactataatcctattatcctatg |
2490800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 41589494 - 41589433
Alignment:
| Q |
218 |
aatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagcaagaga |
279 |
Q |
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| T |
41589494 |
aatgcagaacttgtgcacaactgctgcttatcggccagttagagagttgattcagcaagaga |
41589433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 45989453 - 45989493
Alignment:
| Q |
59 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
99 |
Q |
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| T |
45989453 |
caactatgacagaaggatatagtggaagtgatcttaaggtt |
45989493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 44936073 - 44936113
Alignment:
| Q |
59 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
99 |
Q |
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| T |
44936073 |
caactatgacagaaggatatagcggaagtgatcttaaggtt |
44936113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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