View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20136_low_5 (Length: 338)

Name: NF20136_low_5
Description: NF20136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20136_low_5
NF20136_low_5
[»] chr6 (13 HSPs)
chr6 (1-324)||(13474604-13474932)
chr6 (86-319)||(14020729-14020968)
chr6 (9-153)||(14082741-14082885)
chr6 (247-321)||(14108634-14108713)
chr6 (150-219)||(13894787-13894856)
chr6 (49-98)||(13898038-13898087)
chr6 (150-219)||(13864160-13864229)
chr6 (119-155)||(14023589-14023625)
chr6 (119-153)||(13930562-13930596)
chr6 (153-191)||(13930656-13930694)
chr6 (57-98)||(13894981-13895022)
chr6 (152-232)||(13876802-13876882)
chr6 (150-210)||(13897810-13897870)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 13474932 - 13474604
Alignment:
Q  1 actatttgactcgaaaggctagtcctgaatcctgaccagaatctgtcggactccattcaagacattcttcttgttctttctgtcattcctgaggtaaaac 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13474932 actatttgactccaaaggctagtcctgaatcctgaccagaatctgtctgactccattcaagacattcttcttgttctttctgtcattcctgaggtaaaac 13474833  T
Q  101 tatgttactgaaccattttcataaacaatttcacattttgatattcttcattacttcaactgcaagctaacttggttcgacaattaatatcttgcgctgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13474832 tatgttactgaaccattttcataaacaatttcacattttgatattcttcattacttcaactgcaagctaacttggttcgacaattaatatcctgcgctgc 13474733  T
Q  201 tgcaagaactgttatgaggatgtttttatgattttctttttcctcctcagtaagatagttggataacattaagaacctctgac-----ttttcatatttt 295  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||    
T  13474732 tgcgagaactgttatgaggatgtttttatgattttctttttcctcctcagtaagatagttggataacattaagaacctctgacttcaattttcatatttt 13474633  T
Q  296 cttaaattaaattattagtcttaattgat 324  Q
    |||||||||||||||||||||||||||||    
T  13474632 cttaaattaaattattagtcttaattgat 13474604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 86 - 319
Target Start/End: Original strand, 14020729 - 14020968
Alignment:
Q  86 ttcctgaggtaaaactatgttactgaaccattttcataaacaatttcacattttgatattcttcattacttcaactgca-agctaacttggttcgacaat 184  Q
    ||||||||||||  |||||||||||||| ||||||||||||||| ||  |||||| ||||||||||||| |||  |||| |||||||||||||||||| |    
T  14020729 ttcctgaggtaagtctatgttactgaacaattttcataaacaatgtcttattttggtattcttcattacctcagatgcacagctaacttggttcgacagt 14020828  T
Q  185 taatatcttgcgctgctgcaagaactgttatgaggatgtttttatgattttctttttcctcctcagtaagatagttggataacattaagaacctctgac- 283  Q
    ||||||| ||||||||| | |||| | |||||||| ||||||| ||||||||| ||||||  ||||||||||| |||||||||||||||||||||||||     
T  14020829 taatatcctgcgctgcttcgagaaatattatgagggtgtttttgtgattttctctttccttttcagtaagataattggataacattaagaacctctgact 14020928  T
Q  284 ----ttttcatattttcttaaattaaattattagtcttaa 319  Q
        ||||||||||||||||||||||||||||||||||||    
T  14020929 tcaattttcatattttcttaaattaaattattagtcttaa 14020968  T

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Target: chr6; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 14082741 - 14082885
Alignment:
Q  9 actcgaaaggctagtcctgaatcctgaccagaatctgtcggactccattcaagacattcttcttgttctttctgtcattcctgaggtaaaactatgttac 108  Q
    |||| |||||||  |||||||||||||||||| || ||   |||||||| |||||||||||| |||||||||| ||||||||| |||||| |||||||||    
T  14082741 actccaaaggcttatcctgaatcctgaccagattcagtttcactccatttaagacattcttcctgttctttctctcattcctgtggtaaatctatgttac 14082840  T
Q  109 tgaaccattttcataaacaatttcacattttgatattcttcatta 153  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  14082841 tgaaccattttcataaacaatttcacattttgatattctttatta 14082885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 14108634 - 14108713
Alignment:
Q  247 tcagtaagatagttggataacattaagaacctctgactt-----ttcatattttcttaaattaaattattagtcttaatt 321  Q
    ||||||||||| |||||||||||||||||||| ||||||     |||||||||||||||||| |||||||||||||||||    
T  14108634 tcagtaagataattggataacattaagaacctatgacttaaattttcatattttcttaaattgaattattagtcttaatt 14108713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 13894856 - 13894787
Alignment:
Q  150 attacttcaactgcaagctaacttggttcgacaattaatatcttgcgctgctgcaagaactgttatgagg 219  Q
    ||||||||||||||||||||||||||| ||||| ||||||||  ||||||||||||||||| ||| ||||    
T  13894856 attacttcaactgcaagctaacttggtccgacagttaatatccagcgctgctgcaagaactattaggagg 13894787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 13898087 - 13898038
Alignment:
Q  49 gactccattcaagacattcttcttgttctttctgtcattcctgaggtaaa 98  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13898087 gactccattcaagacattcttcctgttctttctgtcattcctgaggtaaa 13898038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 13864229 - 13864160
Alignment:
Q  150 attacttcaactgcaagctaacttggttcgacaattaatatcttgcgctgctgcaagaactgttatgagg 219  Q
    |||||||||||||| |||||||||||| ||||| ||||||||  |||||||||| |||||| ||| ||||    
T  13864229 attacttcaactgccagctaacttggtccgacagttaatatccagcgctgctgcgagaactattaggagg 13864160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 14023589 - 14023625
Alignment:
Q  119 tcataaacaatttcacattttgatattcttcattact 155  Q
    ||||||||||||||||||||||| |||||||||||||    
T  14023589 tcataaacaatttcacattttgaaattcttcattact 14023625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 13930562 - 13930596
Alignment:
Q  119 tcataaacaatttcacattttgatattcttcatta 153  Q
    ||||||||||||||||||||||| |||||||||||    
T  13930562 tcataaacaatttcacattttgaaattcttcatta 13930596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 13930656 - 13930694
Alignment:
Q  153 acttcaactgcaagctaacttggttcgacaattaatatc 191  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  13930656 acttcaacagcaagctaacttggttcgacagttaatatc 13930694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 13895022 - 13894981
Alignment:
Q  57 tcaagacattcttcttgttctttctgtcattcctgaggtaaa 98  Q
    ||||||||||||||  |||||||||| |||||||||||||||    
T  13895022 tcaagacattcttcccgttctttctgccattcctgaggtaaa 13894981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 13876882 - 13876802
Alignment:
Q  152 tacttcaactgcaagctaacttggttcgacaattaatatcttgcgctgctgcaagaactgttatgaggatgtttttatgat 232  Q
    |||||||||||| |||| ||||||| ||||  ||||||||  |||||||||| |||||| ||| |||| | ||||| ||||    
T  13876882 tacttcaactgccagcttacttggtccgactgttaatatccagcgctgctgcgagaactattaggagggtatttttgtgat 13876802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 13897870 - 13897810
Alignment:
Q  150 attacttcaactgcaagctaacttggttcgacaattaatatcttgcgctgctgcaagaact 210  Q
    |||||||||| ||| |||||||||||||| ||| ||||||||  | |||||||| ||||||    
T  13897870 attacttcaattgccagctaacttggttcaacagttaatatcccgtgctgctgcgagaact 13897810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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