View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20137_high_13 (Length: 238)
Name: NF20137_high_13
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20137_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 35507911 - 35507695
Alignment:
| Q |
18 |
catccatgatcaactttaatatcttctttactagaagttggccataaatcgagttctataacacgcacgccttgttgcagcgcctttatgattggttctt |
117 |
Q |
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| T |
35507911 |
catccatgatcaactttaatatcttctttactagaagttggccataaatcgagttctataacacgcacgccttgttgcagcgcctttatgattggttctt |
35507812 |
T |
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| Q |
118 |
cactgcaatcactgcttagttgatttccagtaaggaaggaattgtgtcctgtatatatgaaataatgtgacaatggagcactcatatcatgatttacctg |
217 |
Q |
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| T |
35507811 |
cactgcaatcactgcttagttgatttccagtaaggaaggaattgtgtcctgtatatatgaaataatgtgacaatggagcactcatatcatgatttacctg |
35507712 |
T |
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| Q |
218 |
taatgacatttatttat |
234 |
Q |
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| T |
35507711 |
taatgacatttatttat |
35507695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 55 - 217
Target Start/End: Complemental strand, 35521298 - 35521136
Alignment:
| Q |
55 |
ttggccataaatcgagttctataacacgcacgccttgttgcagcgcctttatgattggttcttcactgcaatcactgcttagttgatttccagtaaggaa |
154 |
Q |
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| T |
35521298 |
ttggccataaatcgagttctataacgcgcacgcctcgttgcaacgcctttatgattggtacatcactgcaatcactgcttagctgattgccagttagata |
35521199 |
T |
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| Q |
155 |
ggaattgtgtcctgtatatatgaaataatgtgacaatggagcactcatatcatgatttacctg |
217 |
Q |
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| T |
35521198 |
ggaattgtgtcctgtgtatatgaaataatgtgataacggggcattcatgtcatggtgtacctg |
35521136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 30080309 - 30080216
Alignment:
| Q |
117 |
tcactgcaatcactgcttagttgatttccagtaaggaaggaattgtgtcctgtatatatgaaataatgtgacaatggagcactcatatcatgat |
210 |
Q |
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| T |
30080309 |
tcactacaatcactgctgagttgatttccagtgagataagagttatggccagtatatataaaataatgcgacaatggagctgtcatatcctgat |
30080216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 31652102 - 31651921
Alignment:
| Q |
42 |
tctttactagaagttggccataaatcgagttctataacacgcacgccttgttgcagcgcctttatgattggttcttcactgcaatcactgcttagttgat |
141 |
Q |
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| T |
31652102 |
tctttagttgaagatggccataaatcaagttcaattactcgtacaccttgtttcaatgcctctataattggtttatcactgctctcactggtaaattgat |
31652003 |
T |
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| Q |
142 |
ttccagtaaggaaggaattgtgtcctgtatatatgaaataatgtgacaatggagcactcatatcatgatttacctgtaatga |
223 |
Q |
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| T |
31652002 |
ttccagtaaggtaggaattgtgtcctgtatacatgaaataatgtgacaaaggagctttcatatcatgatgtacctgcaatga |
31651921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 31702331 - 31702150
Alignment:
| Q |
42 |
tctttactagaagttggccataaatcgagttctataacacgcacgccttgttgcagcgcctttatgattggttcttcactgcaatcactgcttagttgat |
141 |
Q |
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|||||| | |||| |||||||||||| ||||| || || || || ||||||| || |||| ||| ||||||| ||||||| ||||| | | ||||| |
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| T |
31702331 |
tctttagttgaagatggccataaatcaagttcaattactcgtacaccttgtttcaaagcctctataattggtttatcactgctctcactagtaaattgat |
31702232 |
T |
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| Q |
142 |
ttccagtaaggaaggaattgtgtcctgtatatatgaaataatgtgacaatggagcactcatatcatgatttacctgtaatga |
223 |
Q |
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| T |
31702231 |
ttccagtaaggtaggaattgtgtcctgtatacatgaaataatgtgacaaaggagcttccatatcatgatgtacctgcaatga |
31702150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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