View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20137_high_15 (Length: 234)

Name: NF20137_high_15
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20137_high_15
NF20137_high_15
[»] chr4 (3 HSPs)
chr4 (13-75)||(26500859-26500921)
chr4 (161-214)||(26501007-26501060)
chr4 (12-75)||(1798568-1798631)
[»] chr8 (2 HSPs)
chr8 (13-75)||(8044920-8044982)
chr8 (14-67)||(1578165-1578218)
[»] chr5 (3 HSPs)
chr5 (24-72)||(39368215-39368263)
chr5 (13-67)||(29685225-29685279)
chr5 (18-75)||(39368335-39368392)
[»] chr3 (2 HSPs)
chr3 (16-75)||(17324764-17324822)
chr3 (15-73)||(16284485-16284543)
[»] chr1 (4 HSPs)
chr1 (24-67)||(38709336-38709379)
chr1 (13-64)||(38709454-38709505)
chr1 (165-208)||(4390906-4390949)
chr1 (20-67)||(4391101-4391148)
[»] chr7 (2 HSPs)
chr7 (14-75)||(2569699-2569760)
chr7 (25-72)||(2569578-2569625)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 26500859 - 26500921
Alignment:
Q  13 gagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26500859 gagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 26500921  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 26501007 - 26501060
Alignment:
Q  161 gctgagggagaccttaaacaacttcgaccctagtcctttgacagaacacaacca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26501007 gctgagggagaccttaaacaacttcgaccctagtcctttgacagaacacaacca 26501060  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 1798631 - 1798568
Alignment:
Q  12 agagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 75  Q
    |||||||||||||||| |||||||  || |||||||||||||  |||| ||||||| |||||||    
T  1798631 agagaagaaagtgaactaccaaaaatctaagggagatctagaaggcctggaccctagacccttg 1798568  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 8044920 - 8044982
Alignment:
Q  13 gagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 75  Q
    ||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||    
T  8044920 gagaagaaagtgaaccaccaaaaggttgagggagatctaggaagcctcgaccctagacccttg 8044982  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 1578218 - 1578165
Alignment:
Q  14 agaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgacccta 67  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  1578218 agaagaaattgaaccaccaaaaggctgagggagatctaaccagcctcgacccta 1578165  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 39368263 - 39368215
Alignment:
Q  24 gaaccaccaaaaggctgagggagatctagacagcctcgaccctataccc 72  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  39368263 gaaccaccaagaggctgagggagatctaaacagcctcgaccctagaccc 39368215  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 29685279 - 29685225
Alignment:
Q  13 gagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgacccta 67  Q
    |||||||||| ||||||||||| |||| ||||||||||| ||||| |||||||||    
T  29685279 gagaagaaagcgaaccaccaaatggctaagggagatctaaacagcttcgacccta 29685225  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 39368392 - 39368335
Alignment:
Q  18 gaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 75  Q
    ||||||||||||||||||||||||||  |||||||| | ||||||||| | |||||||    
T  39368392 gaaagtgaaccaccaaaaggctgaggaggatctagaaaacctcgacccaagacccttg 39368335  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 17324764 - 17324822
Alignment:
Q  16 aagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 75  Q
    |||||||||||||| ||||||  ||||||||||||||| ||||||||||||| |||||||    
T  17324764 aagaaagtgaaccatcaaaagt-tgagggagatctagatagcctcgaccctagacccttg 17324822  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 16284543 - 16284485
Alignment:
Q  15 gaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctataccct 73  Q
    ||||||||||||||||||||  ||||||||||||||  | ||||||||||||| |||||    
T  16284543 gaagaaagtgaaccaccaaattgctgagggagatctgaatagcctcgaccctagaccct 16284485  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 38709379 - 38709336
Alignment:
Q  24 gaaccaccaaaaggctgagggagatctagacagcctcgacccta 67  Q
    |||||||||| ||||||||||||||||| |||||||||||||||    
T  38709379 gaaccaccaagaggctgagggagatctaaacagcctcgacccta 38709336  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 38709505 - 38709454
Alignment:
Q  13 gagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgacc 64  Q
    ||||||||||||||||||||||||| ||||||||||||| | | ||||||||    
T  38709505 gagaagaaagtgaaccaccaaaaggttgagggagatctataaaacctcgacc 38709454  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 4390949 - 4390906
Alignment:
Q  165 agggagaccttaaacaacttcgaccctagtcctttgacagaaca 208  Q
    |||||||||||||||||||||||||||||||  |||||| ||||    
T  4390949 agggagaccttaaacaacttcgaccctagtctcttgacataaca 4390906  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 4391148 - 4391101
Alignment:
Q  20 aagtgaaccaccaaaaggctgagggagatctagacagcctcgacccta 67  Q
    ||||||| ||||||||||||  |||||||||||| |||||||||||||    
T  4391148 aagtgaaacaccaaaaggctaggggagatctagaaagcctcgacccta 4391101  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 2569760 - 2569699
Alignment:
Q  14 agaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 75  Q
    ||||||||| ||||||||||||| |||| ||||||||||| ||||| |||| || |||||||    
T  2569760 agaagaaagagaaccaccaaaagactgaaggagatctagatagccttgaccttagacccttg 2569699  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 2569625 - 2569578
Alignment:
Q  25 aaccaccaaaaggctgagggagatctagacagcctcgaccctataccc 72  Q
    ||||||||| ||||||||||||||||| |||| |||||||||| ||||    
T  2569625 aaccaccaagaggctgagggagatctaaacagtctcgaccctagaccc 2569578  T

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