View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20137_high_5 (Length: 423)
Name: NF20137_high_5
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20137_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13880231 - 13880470
Alignment:
| Q |
1 |
aatatgaactccggccaccaccnnnnnnngtctattcttacttttaannnnnnnncttaagaaattcttacttttaatttctataactaattatagttta |
100 |
Q |
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| T |
13880231 |
aatatgaaccccggccaccaccaaaaaaagtctattcttacttttaattttttttcttaaaaaattcttacttttaatttctataactaattatagttta |
13880330 |
T |
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| Q |
101 |
tttattcagttaagttagattctttatttttagttgttagttaaggtttcctttgtataaattagacttgggtcaactttctcaattcataatttataat |
200 |
Q |
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| T |
13880331 |
tttattcagttaaattagattctttatttttagttgttagttaaggtttcctttatataaattagacttgggtcaactttctcaattcataatttataat |
13880430 |
T |
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| Q |
201 |
cgtacattatcaacgtgtaaactctttgaggtgtatttag |
240 |
Q |
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| T |
13880431 |
cgcatattatcaacgtgtaaactctttgaggtttatttag |
13880470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 245 - 390
Target Start/End: Original strand, 13880511 - 13880657
Alignment:
| Q |
245 |
taattaacatgtcaacaaattgattatctaaaaacatg-aaacataaagtgttaaaagagagaaactcatggcacactaactctaaagatcttcaattta |
343 |
Q |
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| T |
13880511 |
taattaacatgtcaacaaattgattatctaaaaacatggaaacataaagtgttaaaagagagaaactcatggcacactaactctaaagatcttcaattta |
13880610 |
T |
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| Q |
344 |
aaaatacactaaaaaggtgtataccaatcaactccatttcatactga |
390 |
Q |
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| T |
13880611 |
aaaatacactaaaaaggtgtataccaatcaactccatttcatactga |
13880657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 243 - 342
Target Start/End: Original strand, 13252937 - 13253038
Alignment:
| Q |
243 |
aataattaacatgtcaacaaattgattatctaaaaa-catg-aaacataaagtgttaaaagagagaaactcatggcacactaactctaaagatcttcaat |
340 |
Q |
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||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |
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| T |
13252937 |
aataattaacatgctaacaaattgattatctaaaaaacatggaaacataaagtgttaaaagaaaggaactcctggcacactaactctaaagatcttcaat |
13253036 |
T |
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| Q |
341 |
tt |
342 |
Q |
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|| |
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| T |
13253037 |
tt |
13253038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 13253894 - 13253943
Alignment:
| Q |
341 |
ttaaaaatacactaaaaaggtgtataccaatcaactccatttcatactga |
390 |
Q |
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|||||||||||||||||||||||| ||||||| |||| |||||| ||||| |
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| T |
13253894 |
ttaaaaatacactaaaaaggtgtaaaccaatctactctatttcaaactga |
13253943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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