View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20137_high_6 (Length: 346)
Name: NF20137_high_6
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20137_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 13880088 - 13879754
Alignment:
| Q |
1 |
ttaactctaaaaaa-gaaaagaactaaatgaattaaaaatgatgaatgaactaagttatatggtgagagtgattcaatgaaaaagtgacacgtcactaag |
99 |
Q |
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| T |
13880088 |
ttaactctaaaaaaagaaaagaactaaatgaattaaaaatgatgaatgaactaagttatatggtgagagtaattcaatgaaaaagtgacacgtcactaag |
13879989 |
T |
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| Q |
100 |
caaagtctcttgatagccaagttagtatccttctagaacattcttaagccatttttcactacaaaaaccctaaaagcaagcgataaagagagaaagcaat |
199 |
Q |
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| T |
13879988 |
caaagtctcttgatagccaagttagtatccttctagaacattctaaagccatttttcactacaaaaaccctaaaagcaagcgataaagagagaaagcaat |
13879889 |
T |
|
| Q |
200 |
cccaagaaaatctcactctgtcaactgtcaacacaatggcattttcccgcctcctttcttcctcttaccactctttcatgtccgccgtgcctgcattcat |
299 |
Q |
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| T |
13879888 |
cccaagaaaatctca--ctgtcaactgttaacacaatggcattttcccgcctcctttcttcctcttaccactctttcatgtccgccgtgcctgcattcat |
13879791 |
T |
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| Q |
300 |
tcgccaccgccccttcgctactgccgccatgtctctg |
336 |
Q |
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| T |
13879790 |
tcgccaccgccccttcgctactgccgccatgtctctg |
13879754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 78 - 332
Target Start/End: Complemental strand, 13875805 - 13875535
Alignment:
| Q |
78 |
gaaaaagtgacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattcttaagccatttt----------tcactacaaaaac |
167 |
Q |
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| T |
13875805 |
gaaaacgtgacacgtcacaaaacaaagtggcttggtaaccaagttagtatccttctagaacattcttaagccatttcactaactcactcactacaaaaac |
13875706 |
T |
|
| Q |
168 |
cctaaaagcaagcgataaagagagaaagcaatcccaagaaaatctc--actctgtcaactg--------tcaacacaatggcattttcccgcctcctttc |
257 |
Q |
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| T |
13875705 |
cctaaaattaag----aaagaaagaaagcaatcccaaaaaaatctctaaatctgtgaagtcaagtttcttcaacacaatggcattttcccgcctcctctc |
13875610 |
T |
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| Q |
258 |
ttcctcttaccactctttcatgtccgccgtgcctgcattcattcgccaccgccccttcgctactgccgccatgtc |
332 |
Q |
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| T |
13875609 |
ttcctgctaccgctcattcatggccgccgtgccttcactcattcgccgccaccccgtcgctactgccgccatgtc |
13875535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 13885918 - 13885860
Alignment:
| Q |
86 |
gacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctt |
144 |
Q |
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| T |
13885918 |
gacacgtcactaagcaaagtggcttggtagccaaggtagtatccttctagaaccttctt |
13885860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 13870812 - 13870759
Alignment:
| Q |
91 |
gtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctt |
144 |
Q |
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| T |
13870812 |
gtcagtaagcaaagtggcttggtagccaagttagtatcattctagaaccttctt |
13870759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 13885756 - 13885720
Alignment:
| Q |
227 |
tcaacacaatggcattttcccgcctcctttcttcctc |
263 |
Q |
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| T |
13885756 |
tcaacacaatggcattttcccgcttcctctcttcctc |
13885720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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