View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20137_low_10 (Length: 331)
Name: NF20137_low_10
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20137_low_10 |
 | |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 11673879 - 11674185
Alignment:
| Q |
17 |
aggaactttcaagaagtaacagaccagaaaagaagccgaagacaccaacatcggggaagtccaaaatagaaagacaaggtatgttcttattaattgcact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
11673879 |
aggaactttcaagaagtaacagaccagaaaagaagccgaagacaccaacatcggtgagctccaaaaaagaaagacaaggtatgttcttcttaattgcact |
11673978 |
T |
|
| Q |
117 |
gcagataacaatttgagttccacatttcttaggtaacatactgaatttctaaaatgggtttcccatgcatatagcttcaacactttcatattcacaagag |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11673979 |
gcagataacaacttgagttccacatttcttaggtaatatatggaatttttaaaatgggtttcccatgcatatagcttcaacactttcatattcacaagag |
11674078 |
T |
|
| Q |
217 |
cctcagaactcgcttttaatctctcatcttgcgccaccattagtttgctctgaaacttgtgttgtaactttgctagcggagtgttgcaaagcacggtgag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11674079 |
cctcagaactcgcttttaatctctcatcttgcgccaccattagtttgctctgaaacttgtgttgtagctttgctagcggagtgttgcaaagcacggtgag |
11674178 |
T |
|
| Q |
317 |
aattatc |
323 |
Q |
| |
|
||||||| |
|
|
| T |
11674179 |
aattatc |
11674185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 94 - 323
Target Start/End: Complemental strand, 11618297 - 11618068
Alignment:
| Q |
94 |
ggtatgttcttattaattgcactgcagataacaatttgagttccacatttcttaggtaacatactgaatttctaaaatgggtttcccatgcatatagctt |
193 |
Q |
| |
|
||||||||||| |||||||||| | |||||| || |||||||| |||||||||| | | ||| |||| ||||||| |||||||||||||||||||| |
|
|
| T |
11618297 |
ggtatgttcttcttaattgcaccggagataaaaaattgagttcgacatttcttaaattatctacaacatttttaaaatgtgtttcccatgcatatagctt |
11618198 |
T |
|
| Q |
194 |
caacactttcatattcacaagagcctcagaactcgcttttaatctctcatcttgcgccaccattagtttgctctgaaacttgtgttgtaactttgctagc |
293 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| | | ||||||||||||||||| |||||||| |
|
|
| T |
11618197 |
caacactttcatattcacaagagcctccgaactcgcctttaatctctcatcttgcgccaccataagttgggtttgaaacttgtgttgtaagtttgctagt |
11618098 |
T |
|
| Q |
294 |
ggagtgttgcaaagcacggtgagaattatc |
323 |
Q |
| |
|
|||| |||||||||||| ||||||| |||| |
|
|
| T |
11618097 |
ggagcgttgcaaagcacagtgagaactatc |
11618068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 11663190 - 11662884
Alignment:
| Q |
17 |
aggaactttcaagaagtaacagaccagaaaagaagccgaagacaccaacatcggggaagtccaaaatagaaagacaaggtatgttcttattaattgcact |
116 |
Q |
| |
|
||||||||||| ||||||||| | | ||||||||| | ||| ||||||| ||| || ||||||||||||||||||| ||||| || ||| | ||||| |
|
|
| T |
11663190 |
aggaactttcaggaagtaacatgctataaaagaagcagcagataccaacaccggcgaggtccaaaatagaaagacaatgtatgcctttcttagtagcact |
11663091 |
T |
|
| Q |
117 |
gcagataacaatttgagttccacatttcttaggtaacatactgaatttctaaaatgggtttcccatgcatatagcttcaacactttcatattcacaagag |
216 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| | || ||| || ||||||| |||||||||||||||||||| | |||||||||| ||||||||| |
|
|
| T |
11663090 |
gcatatagcaatttgagttccacatttcttaatttttctatagaacttttaaaatgtgtttcccatgcatatagctttagcactttcatactcacaagag |
11662991 |
T |
|
| Q |
217 |
cctcagaactcgcttttaatctctcatcttgcgccaccattagtttgctctgaaacttgtgttgtaactttgctagcggagtgttgcaaagcacggtgag |
316 |
Q |
| |
|
|||||||||| || || |||||||| ||||| |||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
11662990 |
cctcagaactagccttcaatctctcgtcttgtgccaccataagttcactctgaaacttgtgttgcaactttgctagtggagtgttgcaaagcatcgtgag |
11662891 |
T |
|
| Q |
317 |
aattatc |
323 |
Q |
| |
|
|| |||| |
|
|
| T |
11662890 |
aactatc |
11662884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 26 - 323
Target Start/End: Original strand, 11631867 - 11632164
Alignment:
| Q |
26 |
caagaagtaacagaccagaaaagaagccgaagacaccaacatcggggaagtccaaaatagaaagacaaggtatgttcttattaattgcactgcagataac |
125 |
Q |
| |
|
|||||||||||| | ||||||||||| | ||||||||||||||| || |||||||| |||||||| ||||||| | |||||||||||||| ||||| |
|
|
| T |
11631867 |
caagaagtaacatgctagaaaagaagcagtagacaccaacatcggcgaggtccaaaagagaaagacgttatatgttcgtcttaattgcactgcatataac |
11631966 |
T |
|
| Q |
126 |
aatttgagttccacatttcttaggtaacatactgaatttctaaaatgggtttcccatgcatatagcttcaacactttcatattcacaagagcctcagaac |
225 |
Q |
| |
|
| ||| |||||| ||||||||| || || |||| ||||||| ||||||| ||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
11631967 |
attttcagttccgcatttcttaaaaaatcgacaacatttttaaaatgattttcccacgcatacaacttcaacactttcatattcacaagagcctccgaac |
11632066 |
T |
|
| Q |
226 |
tcgcttttaatctctcatcttgcgccaccattagtttgctctgaaacttgtgttgtaactttgctagcggagtgttgcaaagcacggtgagaattatc |
323 |
Q |
| |
|
| || ||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||||| |||| |
|
|
| T |
11632067 |
tagcctttaatctctcatcttgtgccaccataagtttgctctgatacttgtgttgtaactttgctagtggataattgcaaatcacagtgagaactatc |
11632164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 161 - 323
Target Start/End: Original strand, 11710547 - 11710709
Alignment:
| Q |
161 |
atttctaaaatgggtttcccatgcatatagcttcaacactttcatattcacaagagcctcagaactcgcttttaatctctcatcttgcgccaccattagt |
260 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||| | |||||||||||||||||||||||| ||||| || || |||||||| ||||| |||||||| ||| |
|
|
| T |
11710547 |
atttttaaaatggttttcccatgcatataacttgagcactttcatattcacaagagcctcggaactagccttcaatctctcgtcttgtgccaccataagt |
11710646 |
T |
|
| Q |
261 |
ttgctctgaaacttgtgttgtaactttgctagcggagtgttgcaaagcacggtgagaattatc |
323 |
Q |
| |
|
| |||||||||||||| |||||||||||||| ||||||||||||||||| || |||| |||| |
|
|
| T |
11710647 |
tcgctctgaaacttgttttgtaactttgctattggagtgttgcaaagcacagtcagaactatc |
11710709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 161 - 298
Target Start/End: Original strand, 11739837 - 11739974
Alignment:
| Q |
161 |
atttctaaaatgggtttcccatgcatatagcttcaacactttcatattcacaagagcctcagaactcgcttttaatctctcatcttgcgccaccattagt |
260 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||| |||||| |||||||| ||||| || ||||| || |||||||| ||||| | ||| |
|
|
| T |
11739837 |
atttttaaaatgggtttcccatgcatataacttcaacactttcacattcactagagcctcggaactagcctttaacctttcatcttgtgccacgagaagt |
11739936 |
T |
|
| Q |
261 |
ttgctctgaaacttgtgttgtaactttgctagcggagt |
298 |
Q |
| |
|
||||| || |||| ||||||||||||||||| ||||| |
|
|
| T |
11739937 |
ttgcttagatacttatgttgtaactttgctagtggagt |
11739974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 297
Target Start/End: Complemental strand, 11755872 - 11755734
Alignment:
| Q |
159 |
gaatttctaaaatgggtttcccatgcatatagcttcaacactttcatattcacaagagcctcagaactcgcttttaatctctcatcttgcgccaccatta |
258 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||| | ||||||||| ||||| |||||||||||||| ||||| || || |||||||| ||||||| | |
|
|
| T |
11755872 |
gaatttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcctcagaactagctttcaacctttcatcttgggccaccagaa |
11755773 |
T |
|
| Q |
259 |
gtttgctctgaaacttgtgttgtaactttgctagcggag |
297 |
Q |
| |
|
|||| || || |||| ||||||||||||||||| |||| |
|
|
| T |
11755772 |
gtttacttagatacttatgttgtaactttgctagtggag |
11755734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 297
Target Start/End: Original strand, 12094063 - 12094201
Alignment:
| Q |
159 |
gaatttctaaaatgggtttcccatgcatatagcttcaacactttcatattcacaagagcctcagaactcgcttttaatctctcatcttgcgccaccatta |
258 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||| | ||||||||||||||| |||||||||||||| || || || || |||||||| ||||||| | |
|
|
| T |
12094063 |
gaatttttaaaatgcatttcccatgcatataactttagcactttcatattcaccagagcctcagaactagccttcaacctttcatcttgggccaccagaa |
12094162 |
T |
|
| Q |
259 |
gtttgctctgaaacttgtgttgtaactttgctagcggag |
297 |
Q |
| |
|
|||| || || |||| ||||||||||||||||| |||| |
|
|
| T |
12094163 |
gtttactaagatacttatgttgtaactttgctagtggag |
12094201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 77 - 323
Target Start/End: Complemental strand, 12666 - 12420
Alignment:
| Q |
77 |
ccaaaatagaaagacaaggtatgttcttattaattgcactgcagataacaatttgagttccacatttcttaggtaacatactgaatttctaaaatgggtt |
176 |
Q |
| |
|
|||||| ||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||||| | || ||| ||| |||||||| || |
|
|
| T |
12666 |
ccaaaagagaaagacattgtatgttcttcttaattgcacggaagataacaatttgagttccacatttcttaagcaatctacaacgtttttaaaatggttt |
12567 |
T |
|
| Q |
177 |
tcccatgcatatagcttcaacactttcatattcacaagagcctcagaactcgcttttaatctctcatcttgcgccaccattagtttgctctgaaacttgt |
276 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||| |||||||| | ||||||||||| ||||| |||| ||| ||||| |||||||| |||| |
|
|
| T |
12566 |
tcccatgcatatagtttcaacactttcatattcgtgagagcttcagaactaacctttaatctctcgtcttgtgccaacataagtttactctgaaatttgt |
12467 |
T |
|
| Q |
277 |
gttgtaactttgctagcggagtgttgcaaagcacggtgagaattatc |
323 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||||| |||| |
|
|
| T |
12466 |
attgtaactttgatagtggagcattgcaaagcacggtgagaactatc |
12420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 106 - 323
Target Start/End: Original strand, 8896 - 9113
Alignment:
| Q |
106 |
ttaattgcactgcagataacaatttgagttccacatttcttaggtaacatactgaatttctaaaatgggtttcccatgcatatagcttcaacactttcat |
205 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||||| || |||| |||| |||| ||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
8896 |
ttaactgcactgctgatagcaatttgagttccacatttcgtaagtaatatacaacatttttaaaatgtgtttcccatgcatataacttcaacactttcat |
8995 |
T |
|
| Q |
206 |
attcacaagagcctcagaactcgcttttaatctctcatcttgcgccaccattagtttgctctgaaacttgtgttgtaactttgctagcggagtgttgcaa |
305 |
Q |
| |
|
| | |||| || |||| |||| || ||||||||||||||||| |||||||| |||| || ||||||||||| | |||||| ||||| ||| |||||| |
|
|
| T |
8996 |
agtaacaaaagactcaaaactagcctttaatctctcatcttgtgccaccataagttgcctttgaaacttgtgctctaacttggctaggcgagcattgcaa |
9095 |
T |
|
| Q |
306 |
agcacggtgagaattatc |
323 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
9096 |
agcatagtgagaattatc |
9113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 289
Target Start/End: Complemental strand, 44811619 - 44811503
Alignment:
| Q |
173 |
ggtttcccatgcatatagcttcaacactttcatattcacaagagcctcagaactcgcttttaatctctcatcttgcgccaccattagtttgctctgaaac |
272 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||||||||||| | || || |||||||||||||| || ||||| |||||||| |||||| |
|
|
| T |
44811619 |
ggtttcccatgcatataacttcagcaccttcatattcacaagagcctcagaagtagccttcaatctctcatcttgtgctaccataagtttgctttgaaac |
44811520 |
T |
|
| Q |
273 |
ttgtgttgtaactttgc |
289 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
44811519 |
ttgtgttgtaactttgc |
44811503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University